About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13689RETROTRANSPOSON
Clavulariidae_g1369STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g13690COLLAGEN ALPHA
Clavulariidae_g13691
Clavulariidae_g13692
Clavulariidae_g13693
Clavulariidae_g13694-
Clavulariidae_g13695
Clavulariidae_g13696
Clavulariidae_g13697DNA POLYMERASE
Clavulariidae_g13698
Clavulariidae_g13699
Clavulariidae_g137COLLAGEN ALPHA
Clavulariidae_g1370CYTOCHROME P450 508A4-RELATED
Clavulariidae_g13700COLLAGEN ALPHA
Clavulariidae_g13701
Clavulariidae_g13702
Clavulariidae_g13703
Clavulariidae_g13704ATP-DEPENDENT DNA HELICASE
Clavulariidae_g13705
Clavulariidae_g13706REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13707REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13708MALE STERILE (3) 76CA
Clavulariidae_g13709DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1371
Clavulariidae_g13710REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13711
Clavulariidae_g13712
Clavulariidae_g13713
Clavulariidae_g13714ZGC:195170
Clavulariidae_g13715PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13716
Clavulariidae_g13717F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g13718PROTEIN, PUTATIVE-RELATED
Clavulariidae_g13719ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g1372
Clavulariidae_g13720
Clavulariidae_g13721PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g13722TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g13723ENDONUCLEASE-RELATED
Clavulariidae_g13724DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13725
Clavulariidae_g13726ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13727
Clavulariidae_g13728ATP-DEPENDENT DNA HELICASE
Clavulariidae_g13729
Clavulariidae_g1373
Clavulariidae_g13730REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13731
Clavulariidae_g13732INTEGRASE CORE DOMAIN CONTAINING PROTEIN
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