Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g13823 | |
Clavulariidae_g13824 | CYTOSOLIC CARBOXYPEPTIDASE |
Clavulariidae_g13825 | MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER |
Clavulariidae_g13826 | SOLUTE CARRIER FAMILY 22 MEMBER 18 |
Clavulariidae_g13827 | C2H2 ZINC FINGER CGI-62-RELATED |
Clavulariidae_g13828 | TANDEM PH DOMAIN CONTAINING PROTEIN |
Clavulariidae_g13829 | - |
Clavulariidae_g1383 | |
Clavulariidae_g13830 | TUBULIN |
Clavulariidae_g13831 | SCHLAFEN |
Clavulariidae_g13832 | ADENYLATE CYCLASE TYPE 1 |
Clavulariidae_g13833 | EXPRESSED PROTEIN |
Clavulariidae_g13834 | ADENYLATE CYCLASE TYPE 1 |
Clavulariidae_g13835 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
Clavulariidae_g13836 | KICSTOR COMPLEX PROTEIN C12ORF66 |
Clavulariidae_g13837 | V-TYPE PROTON ATPASE SUBUNIT H |
Clavulariidae_g13838 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g13839 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g1384 | |
Clavulariidae_g13840 | METABOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g13841 | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN |
Clavulariidae_g13842 | PROTEIN LKAAEAR1 |
Clavulariidae_g13843 | |
Clavulariidae_g13844 | HEDGEHOG |
Clavulariidae_g13845 | UNCHARACTERIZED |
Clavulariidae_g13846 | UNCHARACTERIZED |
Clavulariidae_g13847 | |
Clavulariidae_g13848 | 60S RIBOSOMAL PROTEIN L19 |
Clavulariidae_g13849 | 60S RIBOSOMAL PROTEIN L19 |
Clavulariidae_g1385 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g13850 | MRNA TURNOVER PROTEIN 4 MRTO4 |
Clavulariidae_g13851 | |
Clavulariidae_g13852 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
Clavulariidae_g13853 | |
Clavulariidae_g13854 | SERINE/THREONINE-PROTEIN KINASE 17 |
Clavulariidae_g13855 | |
Clavulariidae_g13856 | |
Clavulariidae_g13857 | ELONGATOR COMPLEX PROTEIN 6 |
Clavulariidae_g13858 | INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING |
Clavulariidae_g13859 | ANKYRIN REPEAT-CONTAINING |
Clavulariidae_g1386 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13860 | DISKS LARGE HOMOLOG 5 |
Clavulariidae_g13861 | UNCHARACTERIZED |
Clavulariidae_g13862 | |
Clavulariidae_g13863 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13864 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
Clavulariidae_g13865 | |
Clavulariidae_g13866 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13867 | FI19480P1 |
Clavulariidae_g13868 | MEIOTIC RECOMBINATION PROTEIN REC114 |