About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13823
Clavulariidae_g13824CYTOSOLIC CARBOXYPEPTIDASE
Clavulariidae_g13825MICOS COMPLEX SUBUNIT MIC26 / MIC27 FAMILY MEMBER
Clavulariidae_g13826SOLUTE CARRIER FAMILY 22 MEMBER 18
Clavulariidae_g13827C2H2 ZINC FINGER CGI-62-RELATED
Clavulariidae_g13828TANDEM PH DOMAIN CONTAINING PROTEIN
Clavulariidae_g13829-
Clavulariidae_g1383
Clavulariidae_g13830TUBULIN
Clavulariidae_g13831SCHLAFEN
Clavulariidae_g13832ADENYLATE CYCLASE TYPE 1
Clavulariidae_g13833EXPRESSED PROTEIN
Clavulariidae_g13834ADENYLATE CYCLASE TYPE 1
Clavulariidae_g13835REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
Clavulariidae_g13836KICSTOR COMPLEX PROTEIN C12ORF66
Clavulariidae_g13837V-TYPE PROTON ATPASE SUBUNIT H
Clavulariidae_g13838METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g13839METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g1384
Clavulariidae_g13840METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g13841U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN
Clavulariidae_g13842PROTEIN LKAAEAR1
Clavulariidae_g13843
Clavulariidae_g13844HEDGEHOG
Clavulariidae_g13845UNCHARACTERIZED
Clavulariidae_g13846UNCHARACTERIZED
Clavulariidae_g13847
Clavulariidae_g1384860S RIBOSOMAL PROTEIN L19
Clavulariidae_g1384960S RIBOSOMAL PROTEIN L19
Clavulariidae_g1385SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g13850MRNA TURNOVER PROTEIN 4 MRTO4
Clavulariidae_g13851
Clavulariidae_g13852CHROMOSOME 20 ORF85 FAMILY MEMBER
Clavulariidae_g13853
Clavulariidae_g13854SERINE/THREONINE-PROTEIN KINASE 17
Clavulariidae_g13855
Clavulariidae_g13856
Clavulariidae_g13857ELONGATOR COMPLEX PROTEIN 6
Clavulariidae_g13858INTEGRIN ALPHA REPEAT DOMAIN-CONTAINING
Clavulariidae_g13859ANKYRIN REPEAT-CONTAINING
Clavulariidae_g1386REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13860DISKS LARGE HOMOLOG 5
Clavulariidae_g13861UNCHARACTERIZED
Clavulariidae_g13862
Clavulariidae_g13863ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13864GLUTATHIONYL-HYDROQUINONE REDUCTASE
Clavulariidae_g13865
Clavulariidae_g13866INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13867FI19480P1
Clavulariidae_g13868MEIOTIC RECOMBINATION PROTEIN REC114
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