About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13869FI19480P1
Clavulariidae_g1387REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13870
Clavulariidae_g13871
Clavulariidae_g13872TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER
Clavulariidae_g13873
Clavulariidae_g13874DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g13875DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g13876CRUMBS FAMILY MEMBER
Clavulariidae_g13877
Clavulariidae_g13878
Clavulariidae_g13879CRUMBS FAMILY MEMBER
Clavulariidae_g1388REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13880CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Clavulariidae_g13881CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Clavulariidae_g13882NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED
Clavulariidae_g13883COLLAGEN ALPHA
Clavulariidae_g13884COLLAGEN ALPHA
Clavulariidae_g13885COLLAGEN ALPHA
Clavulariidae_g13886HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g13887GAMMA TUBULIN COMPLEX PROTEIN
Clavulariidae_g13888FLAVIN MONOAMINE OXIDASE
Clavulariidae_g13889TETRATRICOPEPTIDE REPEAT PROTEIN
Clavulariidae_g1389DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13890DNA LIGASE
Clavulariidae_g13891TUDOR DOMAIN CONTAINING PROTEIN
Clavulariidae_g13892
Clavulariidae_g1389340S RIBOSOMAL PROTEIN S8
Clavulariidae_g13894-
Clavulariidae_g13895CHAPERONIN
Clavulariidae_g13896
Clavulariidae_g13897N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Clavulariidae_g13898ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Clavulariidae_g13899
Clavulariidae_g139ZGC:195170
Clavulariidae_g1390ANKYRIN REPEAT PROTEIN
Clavulariidae_g13900UNCHARACTERIZED
Clavulariidae_g13901ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Clavulariidae_g13902
Clavulariidae_g13903
Clavulariidae_g13904CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g13905PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13906
Clavulariidae_g13907
Clavulariidae_g13908RETROTRANSPOSON
Clavulariidae_g13909REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1391
Clavulariidae_g13910REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13911CENTROSOMAL PROTEIN 2
Clavulariidae_g13912REGULATOR OF CHROMOSOME CONDENSATION
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