Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g13869 | FI19480P1 |
Clavulariidae_g1387 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13870 | |
Clavulariidae_g13871 | |
Clavulariidae_g13872 | TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER |
Clavulariidae_g13873 | |
Clavulariidae_g13874 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g13875 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g13876 | CRUMBS FAMILY MEMBER |
Clavulariidae_g13877 | |
Clavulariidae_g13878 | |
Clavulariidae_g13879 | CRUMBS FAMILY MEMBER |
Clavulariidae_g1388 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13880 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
Clavulariidae_g13881 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
Clavulariidae_g13882 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
Clavulariidae_g13883 | COLLAGEN ALPHA |
Clavulariidae_g13884 | COLLAGEN ALPHA |
Clavulariidae_g13885 | COLLAGEN ALPHA |
Clavulariidae_g13886 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Clavulariidae_g13887 | GAMMA TUBULIN COMPLEX PROTEIN |
Clavulariidae_g13888 | FLAVIN MONOAMINE OXIDASE |
Clavulariidae_g13889 | TETRATRICOPEPTIDE REPEAT PROTEIN |
Clavulariidae_g1389 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13890 | DNA LIGASE |
Clavulariidae_g13891 | TUDOR DOMAIN CONTAINING PROTEIN |
Clavulariidae_g13892 | |
Clavulariidae_g13893 | 40S RIBOSOMAL PROTEIN S8 |
Clavulariidae_g13894 | - |
Clavulariidae_g13895 | CHAPERONIN |
Clavulariidae_g13896 | |
Clavulariidae_g13897 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
Clavulariidae_g13898 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Clavulariidae_g13899 | |
Clavulariidae_g139 | ZGC:195170 |
Clavulariidae_g1390 | ANKYRIN REPEAT PROTEIN |
Clavulariidae_g13900 | UNCHARACTERIZED |
Clavulariidae_g13901 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Clavulariidae_g13902 | |
Clavulariidae_g13903 | |
Clavulariidae_g13904 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Clavulariidae_g13905 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13906 | |
Clavulariidae_g13907 | |
Clavulariidae_g13908 | RETROTRANSPOSON |
Clavulariidae_g13909 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1391 | |
Clavulariidae_g13910 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13911 | CENTROSOMAL PROTEIN 2 |
Clavulariidae_g13912 | REGULATOR OF CHROMOSOME CONDENSATION |