About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13779RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Clavulariidae_g1378REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13780SERINE/THREONINE-PROTEIN KINASE RIO1
Clavulariidae_g13781
Clavulariidae_g13782
Clavulariidae_g13783PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14
Clavulariidae_g13784DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
Clavulariidae_g13785NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Clavulariidae_g13786SIMILAR TO HYPOTHETICAL PROTEIN
Clavulariidae_g13787TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g13788TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g13789RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Clavulariidae_g1379RETROTRANSPOSON
Clavulariidae_g13790
Clavulariidae_g13791ARPIN
Clavulariidae_g13792WINGS APART-LIKE PROTEIN HOMOLOG
Clavulariidae_g13793
Clavulariidae_g13794RETINOVIN-RELATED
Clavulariidae_g13795RBPJ-INTERACTING AND TUBULIN-ASSOCIATED PROTEIN 1
Clavulariidae_g13796CYSTEINE PROTEASE FAMILY C1-RELATED
Clavulariidae_g13797LIPOXYGENASE
Clavulariidae_g13798NICOTINATE PHOSPHORIBOSYLTRANSFERASE
Clavulariidae_g13799PROTON CHANNEL OTOP
Clavulariidae_g138SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1380RETROTRANSPOSON
Clavulariidae_g13800GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g13801TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER
Clavulariidae_g13802
Clavulariidae_g13803ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Clavulariidae_g13804TANDEM PH DOMAIN CONTAINING PROTEIN
Clavulariidae_g13805TRANSCRIPTION FACTOR MAF
Clavulariidae_g13806COX ASSEMBLY MITOCHONDRIAL PROTEIN
Clavulariidae_g13807CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
Clavulariidae_g13808PROTEIN PHOSPHATASE
Clavulariidae_g13809CADHERIN-23
Clavulariidae_g1381PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13810AQUAPORIN TRANSPORTER
Clavulariidae_g13811T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED
Clavulariidae_g13812
Clavulariidae_g13813
Clavulariidae_g13814NUCLEOTIDE KINASE
Clavulariidae_g13815
Clavulariidae_g13816DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
Clavulariidae_g13817SYNTROPHIN
Clavulariidae_g13818EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
Clavulariidae_g13819PHOSPHATIDYLINOSITOL SYNTHASE
Clavulariidae_g1382
Clavulariidae_g13820
Clavulariidae_g13821EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Clavulariidae_g13822RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN
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