Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g13913 | PARAOXONASE |
Clavulariidae_g13914 | 2-5 OLIGOADENYLATE SYNTHETASE |
Clavulariidae_g13915 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
Clavulariidae_g13916 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
Clavulariidae_g13917 | 80 KDA MCM3-ASSOCIATED PROTEIN |
Clavulariidae_g13918 | COLLAGEN ALPHA |
Clavulariidae_g13919 | COLLAGEN ALPHA |
Clavulariidae_g1392 | |
Clavulariidae_g13920 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
Clavulariidae_g13921 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
Clavulariidae_g13922 | COILED-COIL DOMAIN-CONTAINING PROTEIN 60 |
Clavulariidae_g13923 | SD08549P |
Clavulariidae_g13924 | SPERMATOGENESIS-ASSOCIATED 4-RELATED |
Clavulariidae_g13925 | |
Clavulariidae_g13926 | PROLYL ENDOPEPTIDASE |
Clavulariidae_g13927 | |
Clavulariidae_g13928 | |
Clavulariidae_g13929 | |
Clavulariidae_g1393 | |
Clavulariidae_g13930 | PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED |
Clavulariidae_g13931 | 14-3-3 PROTEIN |
Clavulariidae_g13932 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
Clavulariidae_g13933 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
Clavulariidae_g13934 | RIBOPHORIN II |
Clavulariidae_g13935 | TUMOR PROTEIN D52 |
Clavulariidae_g13936 | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 |
Clavulariidae_g13937 | UNCHARACTERIZED |
Clavulariidae_g13938 | FRIZZLED |
Clavulariidae_g13939 | DNA2/NAM7 HELICASE FAMILY |
Clavulariidae_g1394 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g13940 | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE |
Clavulariidae_g13941 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g13942 | ADENOSINE DEAMINASE |
Clavulariidae_g13943 | SRCR DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13944 | KU AUTOANTIGEN DNA HELICASE |
Clavulariidae_g13945 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13946 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13947 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13948 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13949 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g1395 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g13950 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13951 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13952 | |
Clavulariidae_g13953 | MYOTROPHIN |
Clavulariidae_g13954 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g13955 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g13956 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g13957 | |
Clavulariidae_g13958 | INTERFERON-INDUCIBLE GTPASE |