About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g13913PARAOXONASE
Clavulariidae_g139142-5 OLIGOADENYLATE SYNTHETASE
Clavulariidae_g13915NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1
Clavulariidae_g13916NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1
Clavulariidae_g1391780 KDA MCM3-ASSOCIATED PROTEIN
Clavulariidae_g13918COLLAGEN ALPHA
Clavulariidae_g13919COLLAGEN ALPHA
Clavulariidae_g1392
Clavulariidae_g13920PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
Clavulariidae_g13921PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
Clavulariidae_g13922COILED-COIL DOMAIN-CONTAINING PROTEIN 60
Clavulariidae_g13923SD08549P
Clavulariidae_g13924SPERMATOGENESIS-ASSOCIATED 4-RELATED
Clavulariidae_g13925
Clavulariidae_g13926PROLYL ENDOPEPTIDASE
Clavulariidae_g13927
Clavulariidae_g13928
Clavulariidae_g13929
Clavulariidae_g1393
Clavulariidae_g13930PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED
Clavulariidae_g1393114-3-3 PROTEIN
Clavulariidae_g13932EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Clavulariidae_g13933SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
Clavulariidae_g13934RIBOPHORIN II
Clavulariidae_g13935TUMOR PROTEIN D52
Clavulariidae_g13936RNA-BINDING MOTIF PROTEIN, X-LINKED 2
Clavulariidae_g13937UNCHARACTERIZED
Clavulariidae_g13938FRIZZLED
Clavulariidae_g13939DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g1394OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g139402-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
Clavulariidae_g13941TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g13942ADENOSINE DEAMINASE
Clavulariidae_g13943SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13944KU AUTOANTIGEN DNA HELICASE
Clavulariidae_g13945INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13946INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13947INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13948INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13949INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g1395PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g13950INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13951INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13952
Clavulariidae_g13953MYOTROPHIN
Clavulariidae_g13954DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g13955INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g13956CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g13957
Clavulariidae_g13958INTERFERON-INDUCIBLE GTPASE
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