Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g14048 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14049 | |
| Clavulariidae_g1405 | |
| Clavulariidae_g14050 | ENDONUCLEASE-RELATED |
| Clavulariidae_g14051 | |
| Clavulariidae_g14052 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g14053 | |
| Clavulariidae_g14054 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14055 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14056 | |
| Clavulariidae_g14057 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14058 | |
| Clavulariidae_g14059 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g1406 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14060 | COLLAGEN ALPHA |
| Clavulariidae_g14061 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g14062 | DNA POLYMERASE |
| Clavulariidae_g14063 | UNCHARACTERIZED |
| Clavulariidae_g14064 | UNCHARACTERIZED |
| Clavulariidae_g14065 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Clavulariidae_g14066 | UNCHARACTERIZED |
| Clavulariidae_g14067 | PROTEIN CBG26694 |
| Clavulariidae_g14068 | PROTEIN CBG26694 |
| Clavulariidae_g14069 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1407 | |
| Clavulariidae_g14070 | LEUCOKININ RECEPTOR-RELATED |
| Clavulariidae_g14071 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Clavulariidae_g14072 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Clavulariidae_g14073 | |
| Clavulariidae_g14074 | FIBRILLIN-RELATED |
| Clavulariidae_g14075 | |
| Clavulariidae_g14076 | TRANSLATION INITIATION FACTOR IF-3 |
| Clavulariidae_g14077 | NUCLEOPORIN P54 |
| Clavulariidae_g14078 | RCG42593, ISOFORM CRA_A |
| Clavulariidae_g14079 | CYTIDINE DEAMINASE |
| Clavulariidae_g1408 | |
| Clavulariidae_g14080 | GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN 1 |
| Clavulariidae_g14081 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14082 | |
| Clavulariidae_g14083 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g14084 | |
| Clavulariidae_g14085 | |
| Clavulariidae_g14086 | PROTEIN B, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g14087 | PROTEIN CBG26694 |
| Clavulariidae_g14088 | PROTEIN CBG26694 |
| Clavulariidae_g14089 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g1409 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g14090 | |
| Clavulariidae_g14091 | INTERPHOTORECEPTOR MATRIX PROTEOGLYCAN |
| Clavulariidae_g14092 | SIMILAR TO RIKEN CDNA E130308A19 |
