About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14183
Clavulariidae_g14184PROTEIN CBG26694
Clavulariidae_g14185DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14186
Clavulariidae_g14187
Clavulariidae_g14188
Clavulariidae_g14189
Clavulariidae_g1419REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14190COLLAGEN ALPHA
Clavulariidae_g14191POL PROTEIN
Clavulariidae_g14192
Clavulariidae_g14193ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g14194
Clavulariidae_g14195RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14196CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14197
Clavulariidae_g14198THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14199PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g142DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1420
Clavulariidae_g14200
Clavulariidae_g14201
Clavulariidae_g14202RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14203RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14204ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14205RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14206METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE
Clavulariidae_g14207EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14208
Clavulariidae_g14209REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1421
Clavulariidae_g14210
Clavulariidae_g14211
Clavulariidae_g14212ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14213ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14214REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14215PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14216
Clavulariidae_g14217GLPR-RELATED TRANSCRIPTIONAL REPRESSOR
Clavulariidae_g14218RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14219ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1422
Clavulariidae_g14220THAP DOMAIN PROTEIN
Clavulariidae_g14221DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14222DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14223
Clavulariidae_g14224UNCHARACTERIZED
Clavulariidae_g14225
Clavulariidae_g14226
Clavulariidae_g14227RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
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