Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14093 | PROTEIN CBG26694 |
Clavulariidae_g14094 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14095 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14096 | |
Clavulariidae_g14097 | SULFOTRANSFERASE SULT |
Clavulariidae_g14098 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14099 | |
Clavulariidae_g141 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g1410 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Clavulariidae_g14100 | |
Clavulariidae_g14101 | EXPRESSED PROTEIN |
Clavulariidae_g14102 | |
Clavulariidae_g14103 | OXIDASE/PEROXIDASE |
Clavulariidae_g14104 | |
Clavulariidae_g14105 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
Clavulariidae_g14106 | PROTEIN CBG26694 |
Clavulariidae_g14107 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14108 | |
Clavulariidae_g14109 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g1411 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14110 | |
Clavulariidae_g14111 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14112 | PROTEIN CBG26694 |
Clavulariidae_g14113 | |
Clavulariidae_g14114 | |
Clavulariidae_g14115 | MYOTROPHIN |
Clavulariidae_g14116 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14117 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14118 | IRE1-RELATED |
Clavulariidae_g14119 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1412 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Clavulariidae_g14120 | |
Clavulariidae_g14121 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Clavulariidae_g14122 | RETROTRANSPOSON |
Clavulariidae_g14123 | |
Clavulariidae_g14124 | DEAD/H RNA HELICASE, PUTATIVE-RELATED |
Clavulariidae_g14125 | ETHANOLAMINEPHOSPHOTRANSFERASE |
Clavulariidae_g14126 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Clavulariidae_g14127 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Clavulariidae_g14128 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14129 | PHOSPHOLIPASE A2 FAMILY MEMBER |
Clavulariidae_g1413 | |
Clavulariidae_g14130 | |
Clavulariidae_g14131 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14132 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14133 | PROTEIN CBG26694 |
Clavulariidae_g14134 | |
Clavulariidae_g14135 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14136 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g14137 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |