About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14093PROTEIN CBG26694
Clavulariidae_g14094ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14095REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14096
Clavulariidae_g14097SULFOTRANSFERASE SULT
Clavulariidae_g14098PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14099
Clavulariidae_g141HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1410MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g14100
Clavulariidae_g14101EXPRESSED PROTEIN
Clavulariidae_g14102
Clavulariidae_g14103OXIDASE/PEROXIDASE
Clavulariidae_g14104
Clavulariidae_g14105FCH AND DOUBLE SH3 DOMAINS PROTEIN
Clavulariidae_g14106PROTEIN CBG26694
Clavulariidae_g14107REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14108
Clavulariidae_g14109SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1411DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14110
Clavulariidae_g14111ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14112PROTEIN CBG26694
Clavulariidae_g14113
Clavulariidae_g14114
Clavulariidae_g14115MYOTROPHIN
Clavulariidae_g14116ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14117REVERSE TRANSCRIPTASES
Clavulariidae_g14118IRE1-RELATED
Clavulariidae_g14119ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1412MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g14120
Clavulariidae_g14121ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g14122RETROTRANSPOSON
Clavulariidae_g14123
Clavulariidae_g14124DEAD/H RNA HELICASE, PUTATIVE-RELATED
Clavulariidae_g14125ETHANOLAMINEPHOSPHOTRANSFERASE
Clavulariidae_g14126STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g14127STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g14128TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14129PHOSPHOLIPASE A2 FAMILY MEMBER
Clavulariidae_g1413
Clavulariidae_g14130
Clavulariidae_g14131REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14132PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g14133PROTEIN CBG26694
Clavulariidae_g14134
Clavulariidae_g14135ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14136SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g14137ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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