About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14318TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g14319
Clavulariidae_g1432
Clavulariidae_g14320PROTEIN CBG26694
Clavulariidae_g14321PROTEIN CBG26694
Clavulariidae_g14322ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14323METHYLTRANSFERASE
Clavulariidae_g14324PEPTIDASE
Clavulariidae_g14325RETROTRANSPOSON
Clavulariidae_g14326
Clavulariidae_g14327RETROTRANSPOSON
Clavulariidae_g14328
Clavulariidae_g14329
Clavulariidae_g1433INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14330RETROTRANSPOSON
Clavulariidae_g14331REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14332L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g14333ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14334THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14335REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14336ANTIGEN BSP, PUTATIVE-RELATED
Clavulariidae_g14337UNCHARACTERIZED
Clavulariidae_g14338REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14339REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1434
Clavulariidae_g14340CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED
Clavulariidae_g14341
Clavulariidae_g14342
Clavulariidae_g14343REVERSE TRANSCRIPTASE
Clavulariidae_g14344REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14345
Clavulariidae_g14346FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g14347SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g14348FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g14349TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1435PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g14350ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14351DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14352FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g14353DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14354REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14355ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14356
Clavulariidae_g14357
Clavulariidae_g14358PROTEIN G1-LIKE2
Clavulariidae_g14359ENDONUCLEASE RELATED
Clavulariidae_g1436UNCHARACTERIZED
Clavulariidae_g14360
Clavulariidae_g14361
Clavulariidae_g14362ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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