Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14318 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14319 | |
Clavulariidae_g1432 | |
Clavulariidae_g14320 | PROTEIN CBG26694 |
Clavulariidae_g14321 | PROTEIN CBG26694 |
Clavulariidae_g14322 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14323 | METHYLTRANSFERASE |
Clavulariidae_g14324 | PEPTIDASE |
Clavulariidae_g14325 | RETROTRANSPOSON |
Clavulariidae_g14326 | |
Clavulariidae_g14327 | RETROTRANSPOSON |
Clavulariidae_g14328 | |
Clavulariidae_g14329 | |
Clavulariidae_g1433 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g14330 | RETROTRANSPOSON |
Clavulariidae_g14331 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14332 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g14333 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14334 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g14335 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14336 | ANTIGEN BSP, PUTATIVE-RELATED |
Clavulariidae_g14337 | UNCHARACTERIZED |
Clavulariidae_g14338 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14339 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1434 | |
Clavulariidae_g14340 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED |
Clavulariidae_g14341 | |
Clavulariidae_g14342 | |
Clavulariidae_g14343 | REVERSE TRANSCRIPTASE |
Clavulariidae_g14344 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14345 | |
Clavulariidae_g14346 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g14347 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g14348 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g14349 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1435 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14350 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14351 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g14352 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g14353 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14354 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14355 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14356 | |
Clavulariidae_g14357 | |
Clavulariidae_g14358 | PROTEIN G1-LIKE2 |
Clavulariidae_g14359 | ENDONUCLEASE RELATED |
Clavulariidae_g1436 | UNCHARACTERIZED |
Clavulariidae_g14360 | |
Clavulariidae_g14361 | |
Clavulariidae_g14362 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |