About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14453ETS
Clavulariidae_g14454ETS
Clavulariidae_g14455INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14456COLLAGEN ALPHA
Clavulariidae_g14457
Clavulariidae_g14458
Clavulariidae_g14459COLLAGEN ALPHA
Clavulariidae_g1446ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14460
Clavulariidae_g14461
Clavulariidae_g14462SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g14463MULTICOPPER OXIDASE-RELATED
Clavulariidae_g14464CARBOXYLESTERASE
Clavulariidae_g14465REVERSE TRANSCRIPTASES
Clavulariidae_g14466FERROCHELATASE
Clavulariidae_g14467COPINE
Clavulariidae_g14468TROPOMODULIN
Clavulariidae_g14469WASH COMPLEX SUBUNIT 5
Clavulariidae_g1447REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14470ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
Clavulariidae_g14471ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g14472ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g14473ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g14474FIBRILLIN-RELATED
Clavulariidae_g14475PROTEASOME SUBUNIT ALPHA/BETA
Clavulariidae_g14476CHROMOSOME 16 OPEN READING FRAME 96
Clavulariidae_g14477TRANSMEMBRANE PROTEIN 232
Clavulariidae_g14478PLACENTAL PROTEIN 11-RELATED
Clavulariidae_g14479CYTOKINE RECEPTOR
Clavulariidae_g1448
Clavulariidae_g14480UNCHARACTERIZED
Clavulariidae_g14481DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g14482DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g14483SISTER CHROMATID COHESION PROTEIN DCC1-RELATED
Clavulariidae_g14484EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED
Clavulariidae_g14485TYROSINE-PROTEIN KINASE
Clavulariidae_g14486
Clavulariidae_g14487
Clavulariidae_g14488
Clavulariidae_g14489
Clavulariidae_g1449L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g14490
Clavulariidae_g14491SIN3B-RELATED
Clavulariidae_g14492CENTROSOMAL PROTEIN POC5
Clavulariidae_g14493TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g14494PROTEIN CBG16200
Clavulariidae_g14495LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN
Clavulariidae_g14496UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN
Clavulariidae_g14497CYTOKINE RECEPTOR
Clavulariidae_g14498MULTICOPPER OXIDASE-RELATED
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