Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14453 | ETS |
Clavulariidae_g14454 | ETS |
Clavulariidae_g14455 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g14456 | COLLAGEN ALPHA |
Clavulariidae_g14457 | |
Clavulariidae_g14458 | |
Clavulariidae_g14459 | COLLAGEN ALPHA |
Clavulariidae_g1446 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14460 | |
Clavulariidae_g14461 | |
Clavulariidae_g14462 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g14463 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g14464 | CARBOXYLESTERASE |
Clavulariidae_g14465 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14466 | FERROCHELATASE |
Clavulariidae_g14467 | COPINE |
Clavulariidae_g14468 | TROPOMODULIN |
Clavulariidae_g14469 | WASH COMPLEX SUBUNIT 5 |
Clavulariidae_g1447 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14470 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
Clavulariidae_g14471 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g14472 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g14473 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g14474 | FIBRILLIN-RELATED |
Clavulariidae_g14475 | PROTEASOME SUBUNIT ALPHA/BETA |
Clavulariidae_g14476 | CHROMOSOME 16 OPEN READING FRAME 96 |
Clavulariidae_g14477 | TRANSMEMBRANE PROTEIN 232 |
Clavulariidae_g14478 | PLACENTAL PROTEIN 11-RELATED |
Clavulariidae_g14479 | CYTOKINE RECEPTOR |
Clavulariidae_g1448 | |
Clavulariidae_g14480 | UNCHARACTERIZED |
Clavulariidae_g14481 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g14482 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Clavulariidae_g14483 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
Clavulariidae_g14484 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
Clavulariidae_g14485 | TYROSINE-PROTEIN KINASE |
Clavulariidae_g14486 | |
Clavulariidae_g14487 | |
Clavulariidae_g14488 | |
Clavulariidae_g14489 | |
Clavulariidae_g1449 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g14490 | |
Clavulariidae_g14491 | SIN3B-RELATED |
Clavulariidae_g14492 | CENTROSOMAL PROTEIN POC5 |
Clavulariidae_g14493 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g14494 | PROTEIN CBG16200 |
Clavulariidae_g14495 | LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN |
Clavulariidae_g14496 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
Clavulariidae_g14497 | CYTOKINE RECEPTOR |
Clavulariidae_g14498 | MULTICOPPER OXIDASE-RELATED |