About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g144992,5-DIKETO-D-GLUCONIC ACID REDUCTASE
Clavulariidae_g145GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g1450REVERSE TRANSCRIPTASES
Clavulariidae_g14500BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
Clavulariidae_g14501CYTOSOLIC CARBOXYPEPTIDASE
Clavulariidae_g14502TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g14503LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
Clavulariidae_g14504SCHLAFEN
Clavulariidae_g14505TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Clavulariidae_g14506LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
Clavulariidae_g14507
Clavulariidae_g14508
Clavulariidae_g14509EYES ABSENT
Clavulariidae_g1451
Clavulariidae_g14510METABOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g14511AAA DOMAIN-CONTAINING
Clavulariidae_g14512NEPHRIN
Clavulariidae_g14513FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
Clavulariidae_g14514LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED
Clavulariidae_g14515
Clavulariidae_g14516CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Clavulariidae_g14517
Clavulariidae_g14518CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN
Clavulariidae_g14519INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g1452UNCHARACTERIZED
Clavulariidae_g14520INTELECTIN
Clavulariidae_g14521NETRIN/LAMININ-RELATED
Clavulariidae_g14522LD33695P
Clavulariidae_g14523PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g14524PROTEIN SIDEKICK
Clavulariidae_g14525TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Clavulariidae_g14526SOLUTE CARRIER FAMILY 5
Clavulariidae_g14527-
Clavulariidae_g14528PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
Clavulariidae_g14529MYCBP-ASSOCIATED PROTEIN
Clavulariidae_g1453
Clavulariidae_g14530PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g14531TIGHT JUNCTION PROTEIN
Clavulariidae_g14532LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g145332,5-DIKETO-D-GLUCONIC ACID REDUCTASE
Clavulariidae_g14534TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g14535TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g14536GUANIDINOACETATE N-METHYLTRANSFERASE
Clavulariidae_g14537GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
Clavulariidae_g14538PROTEASE M1 ZINC METALLOPROTEASE
Clavulariidae_g14539THAP DOMAIN PROTEIN
Clavulariidae_g1454-
Clavulariidae_g14540LD44762P
Clavulariidae_g14541POLYCYSTIN FAMILY MEMBER
Clavulariidae_g14542DYMECLIN
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