About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14589
Clavulariidae_g1459REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14590CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Clavulariidae_g14591CHITINASE
Clavulariidae_g14592UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g14593CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Clavulariidae_g14594PIKACHURIN-LIKE PROTEIN
Clavulariidae_g14595ZINC FINGER PROTEIN
Clavulariidae_g14596CHITINASE
Clavulariidae_g14597-
Clavulariidae_g14598-
Clavulariidae_g14599HAUS AUGMIN-LIKE COMPLEX SUBUNIT 7
Clavulariidae_g146
Clavulariidae_g1460CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14600AQUAPORIN TRANSPORTER
Clavulariidae_g14601CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN
Clavulariidae_g14602IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g14603IONOTROPIC GLUTAMATE RECEPTOR
Clavulariidae_g14604JOUBERIN
Clavulariidae_g14605IFT140/172-RELATED
Clavulariidae_g14606RIBOSOMAL PROTEIN S6 KINASE
Clavulariidae_g14607TEKTIN
Clavulariidae_g14608DUF814-RELATED
Clavulariidae_g146091-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Clavulariidae_g1461DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14610
Clavulariidae_g14611
Clavulariidae_g14612MANNOSE-6-PHOSPHATE ISOMERASE
Clavulariidae_g14613JNK/SAPK-ASSOCIATED PROTEIN
Clavulariidae_g14614
Clavulariidae_g14615RAPSYN-RELATED
Clavulariidae_g14616AGAP001331-PA-RELATED
Clavulariidae_g14617
Clavulariidae_g14618INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14619
Clavulariidae_g1462DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14620
Clavulariidae_g14621
Clavulariidae_g14622SI:CH1073-475A24.1
Clavulariidae_g14623INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14624TETRATRICOPEPTIDE REPEAT PROTEIN 29
Clavulariidae_g14625LD33695P
Clavulariidae_g14626PROTEIN CBG26694
Clavulariidae_g14627PROTEIN CBG26694
Clavulariidae_g14628POL PROTEIN
Clavulariidae_g14629ENDONUCLEASE-RELATED
Clavulariidae_g1463TYROSINE-PROTEIN KINASE
Clavulariidae_g14630
Clavulariidae_g14631RAPSYN-RELATED
Clavulariidae_g14632SI:CH1073-475A24.1
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