About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14723RETROTRANSPOSON
Clavulariidae_g14724RETROTRANSPOSON
Clavulariidae_g14725ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14726REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14727
Clavulariidae_g14728PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14729ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Clavulariidae_g1473
Clavulariidae_g14730ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Clavulariidae_g14731POLY A POLYMERASE CID PAP -RELATED
Clavulariidae_g14732CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14733RADIAL SPOKE HEAD 1 HOMOLOG
Clavulariidae_g14734CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14735
Clavulariidae_g14736SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14737
Clavulariidae_g14738THAP DOMAIN PROTEIN
Clavulariidae_g14739TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1474CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14740ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g14741LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g14742
Clavulariidae_g14743
Clavulariidae_g14744
Clavulariidae_g14745PROTEIN CBG26694
Clavulariidae_g14746PROTEIN CBG26694
Clavulariidae_g14747
Clavulariidae_g14748SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g14749ZGC:195170
Clavulariidae_g1475CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14750
Clavulariidae_g14751REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14752REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14753ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14754PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14755
Clavulariidae_g14756INTELECTIN
Clavulariidae_g14757
Clavulariidae_g14758EXPRESSED PROTEIN
Clavulariidae_g14759
Clavulariidae_g1476CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14760
Clavulariidae_g14761REVERSE TRANSCRIPTASES
Clavulariidae_g14762CYTOKINE RECEPTOR
Clavulariidae_g14763REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14764
Clavulariidae_g14765PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g14766
Clavulariidae_g14767PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g14768ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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