Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14723 | RETROTRANSPOSON |
Clavulariidae_g14724 | RETROTRANSPOSON |
Clavulariidae_g14725 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g14726 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14727 | |
Clavulariidae_g14728 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14729 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
Clavulariidae_g1473 | |
Clavulariidae_g14730 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
Clavulariidae_g14731 | POLY A POLYMERASE CID PAP -RELATED |
Clavulariidae_g14732 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14733 | RADIAL SPOKE HEAD 1 HOMOLOG |
Clavulariidae_g14734 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Clavulariidae_g14735 | |
Clavulariidae_g14736 | SOLUTE CARRIER FAMILY 10 MEMBER 7 |
Clavulariidae_g14737 | |
Clavulariidae_g14738 | THAP DOMAIN PROTEIN |
Clavulariidae_g14739 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1474 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Clavulariidae_g14740 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g14741 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g14742 | |
Clavulariidae_g14743 | |
Clavulariidae_g14744 | |
Clavulariidae_g14745 | PROTEIN CBG26694 |
Clavulariidae_g14746 | PROTEIN CBG26694 |
Clavulariidae_g14747 | |
Clavulariidae_g14748 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g14749 | ZGC:195170 |
Clavulariidae_g1475 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Clavulariidae_g14750 | |
Clavulariidae_g14751 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14752 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14753 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14754 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14755 | |
Clavulariidae_g14756 | INTELECTIN |
Clavulariidae_g14757 | |
Clavulariidae_g14758 | EXPRESSED PROTEIN |
Clavulariidae_g14759 | |
Clavulariidae_g1476 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Clavulariidae_g14760 | |
Clavulariidae_g14761 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14762 | CYTOKINE RECEPTOR |
Clavulariidae_g14763 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14764 | |
Clavulariidae_g14765 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Clavulariidae_g14766 | |
Clavulariidae_g14767 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g14768 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |