About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14769PROTEIN CBG26694
Clavulariidae_g1477REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14770
Clavulariidae_g14771VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g14772ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14773-
Clavulariidae_g14774AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B
Clavulariidae_g14775
Clavulariidae_g14776
Clavulariidae_g14777LD33804P
Clavulariidae_g14778ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14779ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g1478METALLOPROTEASE TIKI
Clavulariidae_g14780ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14781REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14782UNCHARACTERIZED
Clavulariidae_g14783ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14784IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14785EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
Clavulariidae_g14786REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14787
Clavulariidae_g14788HEAT SHOCK PROTEIN 70KDA
Clavulariidae_g14789
Clavulariidae_g1479I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g14790SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g14791THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14792ATP-DEPENDENT RNA HELICASE
Clavulariidae_g14793ACROSIN-RELATED
Clavulariidae_g14794REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14795INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g14796NNMT/PNMT/TEMT FAMILY MEMBER
Clavulariidae_g14797INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG
Clavulariidae_g14798
Clavulariidae_g14799
Clavulariidae_g148REVERSE TRANSCRIPTASES
Clavulariidae_g1480
Clavulariidae_g14800REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14801ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14802REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14803PROTEIN CBG26694
Clavulariidae_g14804PROTEIN CBG26694
Clavulariidae_g14805RETROTRANSPOSON
Clavulariidae_g14806INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14807
Clavulariidae_g14808THAP DOMAIN PROTEIN
Clavulariidae_g14809TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1481I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g14810
Clavulariidae_g14811PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g14812MUCIN 4-RELATED
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