About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14633SI:CH1073-475A24.1
Clavulariidae_g14634RAPSYN-RELATED
Clavulariidae_g14635MIS18-BINDING PROTEIN 1
Clavulariidae_g14636SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g14637PROTEIN CBG26694
Clavulariidae_g14638DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A
Clavulariidae_g14639MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED
Clavulariidae_g1464INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14640
Clavulariidae_g14641
Clavulariidae_g14642COLLAGEN ALPHA
Clavulariidae_g14643
Clavulariidae_g14644PROTEIN CBG23764
Clavulariidae_g14645UNCHARACTERIZED
Clavulariidae_g14646PROTEIN ARGININE N-METHYLTRANSFERASE
Clavulariidae_g14647REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14648
Clavulariidae_g14649REVERSE TRANSCRIPTASES
Clavulariidae_g1465ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14650
Clavulariidae_g14651
Clavulariidae_g14652BONE MARROW PROTEOGLYCAN
Clavulariidae_g14653-
Clavulariidae_g14654-
Clavulariidae_g14655-
Clavulariidae_g14656-
Clavulariidae_g14657-
Clavulariidae_g14658-
Clavulariidae_g14659-
Clavulariidae_g1466INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14660-
Clavulariidae_g14661CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14662METALLOPEPTIDASE M28 FAMILY MEMBER
Clavulariidae_g14663DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14664
Clavulariidae_g14665
Clavulariidae_g14666
Clavulariidae_g14667
Clavulariidae_g14668DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14669
Clavulariidae_g1467METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
Clavulariidae_g14670RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14671
Clavulariidae_g14672
Clavulariidae_g14673
Clavulariidae_g14674REVERSE TRANSCRIPTASES
Clavulariidae_g14675HYDROGENASE MATURATION FACTOR HOXX
Clavulariidae_g14676SELENOPROTEIN O
Clavulariidae_g14677RETROTRANSPOSON
Clavulariidae_g14678RETROTRANSPOSON
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