Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g14859 | |
Clavulariidae_g1486 | UNCHARACTERIZED |
Clavulariidae_g14860 | |
Clavulariidae_g14861 | TRANSPOSASE-RELATED |
Clavulariidae_g14862 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g14863 | |
Clavulariidae_g14864 | OS02G0260700 PROTEIN |
Clavulariidae_g14865 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Clavulariidae_g14866 | |
Clavulariidae_g14867 | OS02G0260700 PROTEIN |
Clavulariidae_g14868 | |
Clavulariidae_g14869 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Clavulariidae_g1487 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g14870 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14871 | DEAD/H RNA HELICASE, PUTATIVE-RELATED |
Clavulariidae_g14872 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Clavulariidae_g14873 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g14874 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
Clavulariidae_g14875 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Clavulariidae_g14876 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
Clavulariidae_g14877 | |
Clavulariidae_g14878 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14879 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1488 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14880 | RETROTRANSPOSON |
Clavulariidae_g14881 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g14882 | |
Clavulariidae_g14883 | |
Clavulariidae_g14884 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
Clavulariidae_g14885 | COLLAGEN ALPHA |
Clavulariidae_g14886 | |
Clavulariidae_g14887 | FLAP ENDONUCLEASE FAMILY MEMBER |
Clavulariidae_g14888 | |
Clavulariidae_g14889 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1489 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14890 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
Clavulariidae_g14891 | UNCHARACTERIZED |
Clavulariidae_g14892 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 |
Clavulariidae_g14893 | |
Clavulariidae_g14894 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14895 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g14896 | |
Clavulariidae_g14897 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14898 | |
Clavulariidae_g14899 | GLYCOPROTEIN HORMONE RECEPTOR |
Clavulariidae_g149 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g1490 | |
Clavulariidae_g14900 | REVERSE TRANSCRIPTASES |
Clavulariidae_g14901 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
Clavulariidae_g14902 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |