About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14859
Clavulariidae_g1486UNCHARACTERIZED
Clavulariidae_g14860
Clavulariidae_g14861TRANSPOSASE-RELATED
Clavulariidae_g14862HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g14863
Clavulariidae_g14864OS02G0260700 PROTEIN
Clavulariidae_g14865HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g14866
Clavulariidae_g14867OS02G0260700 PROTEIN
Clavulariidae_g14868
Clavulariidae_g14869HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Clavulariidae_g1487CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14870ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14871DEAD/H RNA HELICASE, PUTATIVE-RELATED
Clavulariidae_g14872PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Clavulariidae_g14873PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14874CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Clavulariidae_g14875ARRESTIN DOMAIN CONTAINING PROTEIN
Clavulariidae_g14876N-ACETYLGLUCOSAMINYLTRANSFERASE VI
Clavulariidae_g14877
Clavulariidae_g14878PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14879PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1488ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14880RETROTRANSPOSON
Clavulariidae_g14881OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g14882
Clavulariidae_g14883
Clavulariidae_g14884HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
Clavulariidae_g14885COLLAGEN ALPHA
Clavulariidae_g14886
Clavulariidae_g14887FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g14888
Clavulariidae_g14889REVERSE TRANSCRIPTASES
Clavulariidae_g1489ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14890MITOCHONDRIAL CARRIER PROTEIN RIM2
Clavulariidae_g14891UNCHARACTERIZED
Clavulariidae_g14892SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4
Clavulariidae_g14893
Clavulariidae_g14894REVERSE TRANSCRIPTASES
Clavulariidae_g14895ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14896
Clavulariidae_g14897REVERSE TRANSCRIPTASES
Clavulariidae_g14898
Clavulariidae_g14899GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g149DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1490
Clavulariidae_g14900REVERSE TRANSCRIPTASES
Clavulariidae_g14901CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Clavulariidae_g14902DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
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