About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14903
Clavulariidae_g14904REVERSE TRANSCRIPTASE
Clavulariidae_g14905WNT RELATED
Clavulariidae_g14906
Clavulariidae_g14907OS07G0190500 PROTEIN
Clavulariidae_g14908
Clavulariidae_g14909NUDIX T16 FAMILY MEMBER
Clavulariidae_g1491LD15586P
Clavulariidae_g14910RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING
Clavulariidae_g14911E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Clavulariidae_g14912DACTYLIN
Clavulariidae_g14913
Clavulariidae_g14914POL PROTEIN
Clavulariidae_g14915
Clavulariidae_g14916
Clavulariidae_g14917
Clavulariidae_g14918O-ACYLTRANSFERASE
Clavulariidae_g14919
Clavulariidae_g1492SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g14920PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14921
Clavulariidae_g14922EXPRESSED PROTEIN
Clavulariidae_g14923PROTEIN CBG26694
Clavulariidae_g14924PROTEIN CBG26694
Clavulariidae_g14925RETROTRANSPOSON
Clavulariidae_g14926
Clavulariidae_g14927ZGC:195170
Clavulariidae_g14928SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g14929
Clavulariidae_g1493CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14930
Clavulariidae_g14931PROTEIN CBG26694
Clavulariidae_g14932
Clavulariidae_g14933L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g14934SELENOPROTEIN T
Clavulariidae_g14935UNCHARACTERIZED
Clavulariidae_g14936REVERSE TRANSCRIPTASES
Clavulariidae_g14937
Clavulariidae_g14938
Clavulariidae_g14939RETROTRANSPOSON
Clavulariidae_g1494
Clavulariidae_g14940PROTEIN CBG26694
Clavulariidae_g14941
Clavulariidae_g14942
Clavulariidae_g14943MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40
Clavulariidae_g14944ZINC FINGER PROTEIN ZPR1
Clavulariidae_g14945
Clavulariidae_g14946
Clavulariidae_g14947LIPOXYGENASE
Clavulariidae_g14948REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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