Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g15038 | |
Clavulariidae_g15039 | |
Clavulariidae_g1504 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15040 | |
Clavulariidae_g15041 | UNCHARACTERIZED |
Clavulariidae_g15042 | RETROTRANSPOSON |
Clavulariidae_g15043 | RETROTRANSPOSON |
Clavulariidae_g15044 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15045 | |
Clavulariidae_g15046 | VERTNIN |
Clavulariidae_g15047 | RETROTRANSPOSON |
Clavulariidae_g15048 | INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG |
Clavulariidae_g15049 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1505 | |
Clavulariidae_g15050 | |
Clavulariidae_g15051 | |
Clavulariidae_g15052 | |
Clavulariidae_g15053 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Clavulariidae_g15054 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15055 | DNA POLYMERASE TYPE-X FAMILY MEMBER |
Clavulariidae_g15056 | CELL DEATH ACTIVATOR CIDE |
Clavulariidae_g15057 | |
Clavulariidae_g15058 | |
Clavulariidae_g15059 | |
Clavulariidae_g1506 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15060 | REVERSE TRANSCRIPTASES |
Clavulariidae_g15061 | CHITINASE |
Clavulariidae_g15062 | CHITINASE |
Clavulariidae_g15063 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g15064 | SI:DKEY-29D5.2 |
Clavulariidae_g15065 | COLLAGEN ALPHA |
Clavulariidae_g15066 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g15067 | PROTEIN CBG26694 |
Clavulariidae_g15068 | COLLAGEN ALPHA |
Clavulariidae_g15069 | |
Clavulariidae_g1507 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g15070 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g15071 | GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE D |
Clavulariidae_g15072 | FI24210P1 |
Clavulariidae_g15073 | |
Clavulariidae_g15074 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
Clavulariidae_g15075 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
Clavulariidae_g15076 | |
Clavulariidae_g15077 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
Clavulariidae_g15078 | WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED |
Clavulariidae_g15079 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Clavulariidae_g1508 | IMPORTIN-7, 8, 11 |
Clavulariidae_g15080 | PROTEIN ABHD14B-LIKE |
Clavulariidae_g15081 | - |
Clavulariidae_g15082 | ARYLSULFATASE FAMILY MEMBER |