About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15038
Clavulariidae_g15039
Clavulariidae_g1504PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15040
Clavulariidae_g15041UNCHARACTERIZED
Clavulariidae_g15042RETROTRANSPOSON
Clavulariidae_g15043RETROTRANSPOSON
Clavulariidae_g15044PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15045
Clavulariidae_g15046VERTNIN
Clavulariidae_g15047RETROTRANSPOSON
Clavulariidae_g15048INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG
Clavulariidae_g15049PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1505
Clavulariidae_g15050
Clavulariidae_g15051
Clavulariidae_g15052
Clavulariidae_g15053UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g15054ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15055DNA POLYMERASE TYPE-X FAMILY MEMBER
Clavulariidae_g15056CELL DEATH ACTIVATOR CIDE
Clavulariidae_g15057
Clavulariidae_g15058
Clavulariidae_g15059
Clavulariidae_g1506DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15060REVERSE TRANSCRIPTASES
Clavulariidae_g15061CHITINASE
Clavulariidae_g15062CHITINASE
Clavulariidae_g15063TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15064SI:DKEY-29D5.2
Clavulariidae_g15065COLLAGEN ALPHA
Clavulariidae_g15066HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15067PROTEIN CBG26694
Clavulariidae_g15068COLLAGEN ALPHA
Clavulariidae_g15069
Clavulariidae_g1507HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g15070FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g15071GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE D
Clavulariidae_g15072FI24210P1
Clavulariidae_g15073
Clavulariidae_g15074SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
Clavulariidae_g15075SODIUM/POTASSIUM/CALCIUM EXCHANGER
Clavulariidae_g15076
Clavulariidae_g15077UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1
Clavulariidae_g15078WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED
Clavulariidae_g15079DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g1508IMPORTIN-7, 8, 11
Clavulariidae_g15080PROTEIN ABHD14B-LIKE
Clavulariidae_g15081-
Clavulariidae_g15082ARYLSULFATASE FAMILY MEMBER
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