About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15173RETROTRANSPOSON
Clavulariidae_g15174LD33804P
Clavulariidae_g15175ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15176ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15177GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Clavulariidae_g15178REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15179PROTEIN CBG26694
Clavulariidae_g1518PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15180G PROTEIN-COUPLED RECEPTOR 157-RELATED
Clavulariidae_g15181
Clavulariidae_g15182
Clavulariidae_g15183
Clavulariidae_g15184
Clavulariidae_g15185
Clavulariidae_g15186REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15187
Clavulariidae_g15188PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15189FOLATE TRANSPORTER
Clavulariidae_g1519
Clavulariidae_g15190OLIGOPHRENIN 1
Clavulariidae_g15191REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15192PROTEIN CBG26694
Clavulariidae_g15193
Clavulariidae_g15194
Clavulariidae_g15195
Clavulariidae_g15196
Clavulariidae_g15197
Clavulariidae_g15198
Clavulariidae_g15199UNCHARACTERIZED
Clavulariidae_g152PROTEIN CBG26694
Clavulariidae_g1520
Clavulariidae_g15200TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15201RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15202
Clavulariidae_g15203RETROTRANSPOSON
Clavulariidae_g15204UNCHARACTERIZED
Clavulariidae_g15205
Clavulariidae_g15206ENDONUCLEASE-RELATED
Clavulariidae_g15207UNCHARACTERIZED
Clavulariidae_g15208PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15209POLYCOMB GROUP PROTEIN
Clavulariidae_g1521EXPRESSED PROTEIN
Clavulariidae_g15210CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15211CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15212PROTON CHANNEL OTOP
Clavulariidae_g15213PROTON CHANNEL OTOP
Clavulariidae_g15214MRNA-CAPPING ENZYME
Clavulariidae_g15215NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Clavulariidae_g15216LEUCINE ZIPPER PROTEIN 4-RELATED
Clavulariidae_g15217EXPRESSED PROTEIN
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