About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15308-
Clavulariidae_g15309HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1531
Clavulariidae_g15310REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15311-
Clavulariidae_g15312-
Clavulariidae_g15313
Clavulariidae_g15314BONUS, ISOFORM C-RELATED
Clavulariidae_g15315
Clavulariidae_g15316RETROTRANSPOSON
Clavulariidae_g15317
Clavulariidae_g15318BONUS, ISOFORM C-RELATED
Clavulariidae_g15319ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1532-
Clavulariidae_g15320REVERSE TRANSCRIPTASES
Clavulariidae_g15321
Clavulariidae_g15322THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16
Clavulariidae_g15323
Clavulariidae_g15324DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g15325THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16
Clavulariidae_g15326
Clavulariidae_g15327DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g15328STEROL DESATURASE
Clavulariidae_g15329
Clavulariidae_g1533
Clavulariidae_g15330
Clavulariidae_g15331OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g15332
Clavulariidae_g15333
Clavulariidae_g15334CENTROBIN
Clavulariidae_g15335TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g15336TSEC1-RELATED
Clavulariidae_g15337TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15338PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15339
Clavulariidae_g1534
Clavulariidae_g15340PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15341REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15342REVERSE TRANSCRIPTASES
Clavulariidae_g15343
Clavulariidae_g15344THAP DOMAIN PROTEIN
Clavulariidae_g15345
Clavulariidae_g153465-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g15347
Clavulariidae_g15348
Clavulariidae_g15349FIBRILLIN-RELATED
Clavulariidae_g1535PROTEIN CBG26694
Clavulariidae_g15350PROTEIN CBG26694
Clavulariidae_g15351MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g15352C2H2-TYPE DOMAIN-CONTAINING PROTEIN
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