Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g15128 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15129 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g1513 | TRANSPOSASE, PUTATIVE-RELATED |
Clavulariidae_g15130 | - |
Clavulariidae_g15131 | ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1 |
Clavulariidae_g15132 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g15133 | |
Clavulariidae_g15134 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Clavulariidae_g15135 | REVERSE TRANSCRIPTASES |
Clavulariidae_g15136 | INTELECTIN |
Clavulariidae_g15137 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15138 | |
Clavulariidae_g15139 | BETA-ALANINE-ACTIVATING ENZYME |
Clavulariidae_g1514 | |
Clavulariidae_g15140 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
Clavulariidae_g15141 | |
Clavulariidae_g15142 | |
Clavulariidae_g15143 | UNNAMED PRODUCT |
Clavulariidae_g15144 | UNNAMED PRODUCT |
Clavulariidae_g15145 | |
Clavulariidae_g15146 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15147 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15148 | PROTEIN CBG23806 |
Clavulariidae_g15149 | |
Clavulariidae_g1515 | |
Clavulariidae_g15150 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g15151 | |
Clavulariidae_g15152 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
Clavulariidae_g15153 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15154 | KINASE D-INTERACTING SUBSTRATE OF 220 KDA |
Clavulariidae_g15155 | |
Clavulariidae_g15156 | |
Clavulariidae_g15157 | MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g15158 | |
Clavulariidae_g15159 | PROTEIN CBG26694 |
Clavulariidae_g1516 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15160 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15161 | MONOCARBOXYLATE TRANSPORTER |
Clavulariidae_g15162 | |
Clavulariidae_g15163 | |
Clavulariidae_g15164 | LD33804P |
Clavulariidae_g15165 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
Clavulariidae_g15166 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15167 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE |
Clavulariidae_g15168 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15169 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Clavulariidae_g1517 | EXPRESSED PROTEIN |
Clavulariidae_g15170 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15171 | |
Clavulariidae_g15172 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |