About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15128ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15129SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1513TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g15130-
Clavulariidae_g15131ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1
Clavulariidae_g15132L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g15133
Clavulariidae_g15134UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g15135REVERSE TRANSCRIPTASES
Clavulariidae_g15136INTELECTIN
Clavulariidae_g15137REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15138
Clavulariidae_g15139BETA-ALANINE-ACTIVATING ENZYME
Clavulariidae_g1514
Clavulariidae_g15140SH2-SH3 ADAPTOR PROTEIN-RELATED
Clavulariidae_g15141
Clavulariidae_g15142
Clavulariidae_g15143UNNAMED PRODUCT
Clavulariidae_g15144UNNAMED PRODUCT
Clavulariidae_g15145
Clavulariidae_g15146REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15147ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15148PROTEIN CBG23806
Clavulariidae_g15149
Clavulariidae_g1515
Clavulariidae_g15150TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15151
Clavulariidae_g15152VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
Clavulariidae_g15153PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15154KINASE D-INTERACTING SUBSTRATE OF 220 KDA
Clavulariidae_g15155
Clavulariidae_g15156
Clavulariidae_g15157MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g15158
Clavulariidae_g15159PROTEIN CBG26694
Clavulariidae_g1516PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15160ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15161MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g15162
Clavulariidae_g15163
Clavulariidae_g15164LD33804P
Clavulariidae_g15165CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g15166C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g151671,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g15168ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15169GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Clavulariidae_g1517EXPRESSED PROTEIN
Clavulariidae_g15170RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15171
Clavulariidae_g15172GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
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