About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15263DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15264DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15265
Clavulariidae_g15266
Clavulariidae_g15267
Clavulariidae_g15268TRANSPOSASE
Clavulariidae_g15269
Clavulariidae_g1527TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15270L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g15271ATP-DEPENDENT DNA HELICASE
Clavulariidae_g15272
Clavulariidae_g15273RE74312P
Clavulariidae_g15274LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED
Clavulariidae_g15275LONG-CHAIN-FATTY-ACID--COA LIGASE
Clavulariidae_g15276UNCHARACTERIZED
Clavulariidae_g15277MITOGEN-ACTIVATED PROTEIN KINASE
Clavulariidae_g15278UNCHARACTERIZED
Clavulariidae_g15279TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1528
Clavulariidae_g15280UNCHARACTERIZED
Clavulariidae_g15281UNCHARACTERIZED
Clavulariidae_g15282THROMBOSPONDIN
Clavulariidae_g15283
Clavulariidae_g15284EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15285REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15286
Clavulariidae_g15287
Clavulariidae_g15288CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3
Clavulariidae_g15289REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1529DNA POLYMERASE
Clavulariidae_g15290THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g15291
Clavulariidae_g15292PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15293RETROTRANSPOSON
Clavulariidae_g15294HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15295HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15296
Clavulariidae_g15297
Clavulariidae_g15298S -2-HYDROXY-ACID OXIDASE-RELATED
Clavulariidae_g15299S -2-HYDROXY-ACID OXIDASE-RELATED
Clavulariidae_g153TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1530INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g15300
Clavulariidae_g153012-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL
Clavulariidae_g15302PROTEIN CBG26694
Clavulariidae_g15303PROTEIN CBG26694
Clavulariidae_g15304ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g15305MYND DOMAIN-CONTAINING
Clavulariidae_g15306PROTEIN CBG26694
Clavulariidae_g15307
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