Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g15263 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g15264 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g15265 | |
Clavulariidae_g15266 | |
Clavulariidae_g15267 | |
Clavulariidae_g15268 | TRANSPOSASE |
Clavulariidae_g15269 | |
Clavulariidae_g1527 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g15270 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g15271 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g15272 | |
Clavulariidae_g15273 | RE74312P |
Clavulariidae_g15274 | LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED |
Clavulariidae_g15275 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
Clavulariidae_g15276 | UNCHARACTERIZED |
Clavulariidae_g15277 | MITOGEN-ACTIVATED PROTEIN KINASE |
Clavulariidae_g15278 | UNCHARACTERIZED |
Clavulariidae_g15279 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1528 | |
Clavulariidae_g15280 | UNCHARACTERIZED |
Clavulariidae_g15281 | UNCHARACTERIZED |
Clavulariidae_g15282 | THROMBOSPONDIN |
Clavulariidae_g15283 | |
Clavulariidae_g15284 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15285 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15286 | |
Clavulariidae_g15287 | |
Clavulariidae_g15288 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3 |
Clavulariidae_g15289 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1529 | DNA POLYMERASE |
Clavulariidae_g15290 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g15291 | |
Clavulariidae_g15292 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g15293 | RETROTRANSPOSON |
Clavulariidae_g15294 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g15295 | HMG DOMAIN-CONTAINING PROTEIN 3 |
Clavulariidae_g15296 | |
Clavulariidae_g15297 | |
Clavulariidae_g15298 | S -2-HYDROXY-ACID OXIDASE-RELATED |
Clavulariidae_g15299 | S -2-HYDROXY-ACID OXIDASE-RELATED |
Clavulariidae_g153 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1530 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g15300 | |
Clavulariidae_g15301 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
Clavulariidae_g15302 | PROTEIN CBG26694 |
Clavulariidae_g15303 | PROTEIN CBG26694 |
Clavulariidae_g15304 | ENZYMATIC POLYPROTEIN-RELATED |
Clavulariidae_g15305 | MYND DOMAIN-CONTAINING |
Clavulariidae_g15306 | PROTEIN CBG26694 |
Clavulariidae_g15307 |