About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15353
Clavulariidae_g15354
Clavulariidae_g15355MALE STERILE (3) 76CA
Clavulariidae_g15356ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15357TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Clavulariidae_g15358FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g15359REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1536REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15360FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g15361STIMULATOR OF INTERFERON GENES PROTEIN
Clavulariidae_g15362MASK PROTEIN
Clavulariidae_g15363DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15364DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15365
Clavulariidae_g15366
Clavulariidae_g15367
Clavulariidae_g15368AGAP005574-PA
Clavulariidae_g15369
Clavulariidae_g1537
Clavulariidae_g15370PROTEIN CBG26694
Clavulariidae_g15371
Clavulariidae_g15372ENDONUCLEASE-RELATED
Clavulariidae_g15373
Clavulariidae_g15374
Clavulariidae_g15375PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15376
Clavulariidae_g15377
Clavulariidae_g15378REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15379UNCHARACTERIZED
Clavulariidae_g1538EXPRESSED PROTEIN
Clavulariidae_g15380ALPHA-PROTEIN KINASE 1
Clavulariidae_g15381DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15382ANKYRIN REPEAT PROTEIN
Clavulariidae_g15383
Clavulariidae_g15384CHROMOBOX PROTEIN
Clavulariidae_g15385DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15386RETROTRANSPOSON
Clavulariidae_g15387
Clavulariidae_g15388
Clavulariidae_g15389CENTROSOMAL PROTEIN CEP135
Clavulariidae_g1539ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15390PROTEIN CBG26694
Clavulariidae_g15391PROTEIN BARK BEETLE
Clavulariidae_g15392
Clavulariidae_g15393PROTEIN BARK BEETLE
Clavulariidae_g15394CENTROSOMAL PROTEIN CEP135
Clavulariidae_g15395NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE CONTAINING PROTEIN
Clavulariidae_g15396-
Clavulariidae_g15397UNCHARACTERIZED
Clavulariidae_g15398DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
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