About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15489ACYL-COA DEHYDROGENASE
Clavulariidae_g1549PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15490-
Clavulariidae_g15491
Clavulariidae_g15492
Clavulariidae_g15493
Clavulariidae_g15494MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED
Clavulariidae_g15495RHO FAMILY GTPASE
Clavulariidae_g15496GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g15497ETS
Clavulariidae_g15498ETS
Clavulariidae_g15499ETS
Clavulariidae_g155PROTEIN CBG26694
Clavulariidae_g1550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15500
Clavulariidae_g15501ETS
Clavulariidae_g15502
Clavulariidae_g15503
Clavulariidae_g15504
Clavulariidae_g15505
Clavulariidae_g15506
Clavulariidae_g15507RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15508
Clavulariidae_g15509
Clavulariidae_g1551THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g15510TRANSCRIPTION FACTOR MAF
Clavulariidae_g15511
Clavulariidae_g15512
Clavulariidae_g15513
Clavulariidae_g15514
Clavulariidae_g15515
Clavulariidae_g15516
Clavulariidae_g15517
Clavulariidae_g15518
Clavulariidae_g15519THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
Clavulariidae_g1552DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15520PRE-MRNA SPLICING FACTOR-RELATED
Clavulariidae_g15521CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Clavulariidae_g1552260S RIBOSOMAL PROTEIN L18A
Clavulariidae_g15523SYNAPTOPHYSIN
Clavulariidae_g15524ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10
Clavulariidae_g15525RNA-DEPENDENT RNA POLYMERASE
Clavulariidae_g15526RNA-DEPENDENT RNA POLYMERASE
Clavulariidae_g15527COPINE
Clavulariidae_g15528TUBULIN MONOGLYCYLASE TTLL3
Clavulariidae_g15529CGI-121 FAMILY MEMBER
Clavulariidae_g1553CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15530GUANINE NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g15531
Clavulariidae_g15532PHOSDUCIN-LIKE PROTEIN
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