Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15579 | MYOTROPHIN |
| Clavulariidae_g1558 | |
| Clavulariidae_g15580 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Clavulariidae_g15581 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| Clavulariidae_g15582 | POTE ANKYRIN DOMAIN |
| Clavulariidae_g15583 | CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN |
| Clavulariidae_g15584 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 |
| Clavulariidae_g15585 | RHO FAMILY GTPASE |
| Clavulariidae_g15586 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Clavulariidae_g15587 | |
| Clavulariidae_g15588 | INTELECTIN |
| Clavulariidae_g15589 | |
| Clavulariidae_g1559 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15590 | FRUCTOSE-2,6-BISPHOSPHATASE TIGAR |
| Clavulariidae_g15591 | WD REPEAT DOMAIN-RELATED |
| Clavulariidae_g15592 | UNCHARACTERIZED |
| Clavulariidae_g15593 | MALEYLACETOACETATE ISOMERASE |
| Clavulariidae_g15594 | |
| Clavulariidae_g15595 | UNCHARACTERIZED |
| Clavulariidae_g15596 | |
| Clavulariidae_g15597 | |
| Clavulariidae_g15598 | - |
| Clavulariidae_g15599 | ADENOSYLHOMOCYSTEINASE |
| Clavulariidae_g156 | PROTEIN G1-LIKE2 |
| Clavulariidae_g1560 | SNAC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15600 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Clavulariidae_g15601 | ACTIN |
| Clavulariidae_g15602 | 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE |
| Clavulariidae_g15603 | 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE |
| Clavulariidae_g15604 | 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE |
| Clavulariidae_g15605 | UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 |
| Clavulariidae_g15606 | ARMET-LIKE PROTEIN |
| Clavulariidae_g15607 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| Clavulariidae_g15608 | |
| Clavulariidae_g15609 | |
| Clavulariidae_g1561 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g15610 | |
| Clavulariidae_g15611 | GALACTOSE-3-O-SULFOTRANSFERASE |
| Clavulariidae_g15612 | |
| Clavulariidae_g15613 | |
| Clavulariidae_g15614 | |
| Clavulariidae_g15615 | SI:DKEY-57N24.6 |
| Clavulariidae_g15616 | SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN |
| Clavulariidae_g15617 | XAP-5 PROTEIN-RELATED |
| Clavulariidae_g15618 | GLUTATHIONE REDUCTASE |
| Clavulariidae_g15619 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| Clavulariidae_g1562 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15620 | COATOMER SUBUNIT GAMMA |
| Clavulariidae_g15621 | PHD FINGER PROTEINS |
| Clavulariidae_g15622 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
