Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15669 | |
| Clavulariidae_g1567 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15670 | ENOYL-COA HYDRATASE-RELATED |
| Clavulariidae_g15671 | TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1 |
| Clavulariidae_g15672 | RIBOSOMAL PROTEIN S6 KINASE |
| Clavulariidae_g15673 | |
| Clavulariidae_g15674 | HYDROLASE |
| Clavulariidae_g15675 | MYOTUBULARIN-RELATED |
| Clavulariidae_g15676 | PROTEIN CBG20567 |
| Clavulariidae_g15677 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Clavulariidae_g15678 | GRAM DOMAIN-CONTAINING PROTEIN 4 |
| Clavulariidae_g15679 | |
| Clavulariidae_g1568 | |
| Clavulariidae_g15680 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
| Clavulariidae_g15681 | SENTRIN-SPECIFIC PROTEASE 8 |
| Clavulariidae_g15682 | RAB FAMILY |
| Clavulariidae_g15683 | TYROSINASE FAMILY MEMBER |
| Clavulariidae_g15684 | TYROSINASE FAMILY MEMBER |
| Clavulariidae_g15685 | PROTEIN NEDD1 |
| Clavulariidae_g15686 | 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED |
| Clavulariidae_g15687 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| Clavulariidae_g15688 | SERINE PROTEASE |
| Clavulariidae_g15689 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| Clavulariidae_g1569 | |
| Clavulariidae_g15690 | SPHINGOSINE KINASE |
| Clavulariidae_g15691 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Clavulariidae_g15692 | BOULE-RELATED |
| Clavulariidae_g15693 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Clavulariidae_g15694 | - |
| Clavulariidae_g15695 | FANCONI ANEMIA GROUP D2 PROTEIN |
| Clavulariidae_g15696 | |
| Clavulariidae_g15697 | UNCHARACTERIZED |
| Clavulariidae_g15698 | SELENIDE, WATER DIKINASE |
| Clavulariidae_g15699 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
| Clavulariidae_g157 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g1570 | |
| Clavulariidae_g15700 | |
| Clavulariidae_g15701 | BCR-ASSOCIATED PROTEIN, BAP |
| Clavulariidae_g15702 | AMINO ACID TRANSPORTER |
| Clavulariidae_g15703 | DNA REPAIR PROTEIN XP-C / RAD4 |
| Clavulariidae_g15704 | DYNAMIN |
| Clavulariidae_g15705 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| Clavulariidae_g15706 | INHIBITOR OF GROWTH PROTEIN |
| Clavulariidae_g15707 | AMINOMETHYLTRANSFERASE |
| Clavulariidae_g15708 | PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4 |
| Clavulariidae_g15709 | FAT ATYPICAL CADHERIN-RELATED |
| Clavulariidae_g1571 | |
| Clavulariidae_g15710 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |
| Clavulariidae_g15711 | NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2 |
| Clavulariidae_g15712 | HISTIDINE AMMONIA-LYASE |
