Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15803 | PENTRAXIN |
| Clavulariidae_g15804 | |
| Clavulariidae_g15805 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15806 | ZINC FINGER PROTEIN |
| Clavulariidae_g15807 | B-CELL RECEPTOR CD22 |
| Clavulariidae_g15808 | PROTEIN SIDEKICK |
| Clavulariidae_g15809 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Clavulariidae_g1581 | |
| Clavulariidae_g15810 | ZINC FINGER PROTEIN |
| Clavulariidae_g15811 | TUDOR DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g15812 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6 |
| Clavulariidae_g15813 | WD REPEAT-CONTAINING PROTEIN 55 |
| Clavulariidae_g15814 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Clavulariidae_g15815 | |
| Clavulariidae_g15816 | TUBULIN |
| Clavulariidae_g15817 | SERINE PEPTIDASE S9 FAMILY MEMBER |
| Clavulariidae_g15818 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Clavulariidae_g15819 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
| Clavulariidae_g1582 | UNCHARACTERIZED |
| Clavulariidae_g15820 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17 |
| Clavulariidae_g15821 | ARGININE OR CREATINE KINASE |
| Clavulariidae_g15822 | |
| Clavulariidae_g15823 | THREONINE SYNTHASE-LIKE 1 |
| Clavulariidae_g15824 | DNA2/NAM7 HELICASE FAMILY |
| Clavulariidae_g15825 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
| Clavulariidae_g15826 | COILED-COIL DOMAIN-CONTAINING PROTEIN 162 |
| Clavulariidae_g15827 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15828 | PROTEIN SIDEKICK |
| Clavulariidae_g15829 | PROTEIN SIDEKICK |
| Clavulariidae_g1583 | |
| Clavulariidae_g15830 | |
| Clavulariidae_g15831 | |
| Clavulariidae_g15832 | |
| Clavulariidae_g15833 | |
| Clavulariidae_g15834 | PROTEIN CBG23764 |
| Clavulariidae_g15835 | |
| Clavulariidae_g15836 | |
| Clavulariidae_g15837 | PROTEIN SIDEKICK |
| Clavulariidae_g15838 | JITTERBUG, ISOFORM N |
| Clavulariidae_g15839 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
| Clavulariidae_g1584 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15840 | CENTROSOMAL PROTEIN OF 170 KDA |
| Clavulariidae_g15841 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Clavulariidae_g15842 | STABILIN |
| Clavulariidae_g15843 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| Clavulariidae_g15844 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| Clavulariidae_g15845 | PROTEIN SIDEKICK |
| Clavulariidae_g15846 | PROTEIN SIDEKICK |
| Clavulariidae_g15847 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Clavulariidae_g15848 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
