Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15894 | REGULATOR OF CHROMOSOME CONDENSATION |
| Clavulariidae_g15895 | FUKUTIN RELATED PROTEIN |
| Clavulariidae_g15896 | ARMADILLO-TYPE FOLD-RELATED |
| Clavulariidae_g15897 | IRE1-RELATED |
| Clavulariidae_g15898 | LSM1 |
| Clavulariidae_g15899 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Clavulariidae_g159 | |
| Clavulariidae_g1590 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15900 | |
| Clavulariidae_g15901 | - |
| Clavulariidae_g15902 | CYTOKINE RECEPTOR |
| Clavulariidae_g15903 | |
| Clavulariidae_g15904 | |
| Clavulariidae_g15905 | PROTEIN CBG13728 |
| Clavulariidae_g15906 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| Clavulariidae_g15907 | |
| Clavulariidae_g15908 | |
| Clavulariidae_g15909 | |
| Clavulariidae_g1591 | |
| Clavulariidae_g15910 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
| Clavulariidae_g15911 | |
| Clavulariidae_g15912 | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED |
| Clavulariidae_g15913 | |
| Clavulariidae_g15914 | FI23527P1 |
| Clavulariidae_g15915 | TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED |
| Clavulariidae_g15916 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15917 | |
| Clavulariidae_g15918 | |
| Clavulariidae_g15919 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g1592 | |
| Clavulariidae_g15920 | |
| Clavulariidae_g15921 | BONUS, ISOFORM C-RELATED |
| Clavulariidae_g15922 | GH12955P |
| Clavulariidae_g15923 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Clavulariidae_g15924 | ANOCTAMIN |
| Clavulariidae_g15925 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18 |
| Clavulariidae_g15926 | INOSITOL-TETRAKISPHOSPHATE 1-KINASE |
| Clavulariidae_g15927 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| Clavulariidae_g15928 | |
| Clavulariidae_g15929 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1593 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15930 | |
| Clavulariidae_g15931 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g15932 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
| Clavulariidae_g15933 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15934 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15935 | |
| Clavulariidae_g15936 | |
| Clavulariidae_g15937 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15938 |
