Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g16028 | |
| Clavulariidae_g16029 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1603 | |
| Clavulariidae_g16030 | |
| Clavulariidae_g16031 | |
| Clavulariidae_g16032 | PHOSPHATIDYLSERINE DECARBOXYLASE |
| Clavulariidae_g16033 | |
| Clavulariidae_g16034 | |
| Clavulariidae_g16035 | PHOSPHATIDYLSERINE DECARBOXYLASE |
| Clavulariidae_g16036 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g16037 | PHOSPHATIDYLSERINE DECARBOXYLASE |
| Clavulariidae_g16038 | |
| Clavulariidae_g16039 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g1604 | |
| Clavulariidae_g16040 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g16041 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g16042 | MYOTROPHIN |
| Clavulariidae_g16043 | |
| Clavulariidae_g16044 | |
| Clavulariidae_g16045 | PHOSPHATIDYLSERINE DECARBOXYLASE |
| Clavulariidae_g16046 | HMG DOMAIN-CONTAINING PROTEIN 3 |
| Clavulariidae_g16047 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g16048 | EXPRESSED PROTEIN |
| Clavulariidae_g16049 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Clavulariidae_g1605 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g16050 | |
| Clavulariidae_g16051 | EXPRESSED PROTEIN |
| Clavulariidae_g16052 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Clavulariidae_g16053 | |
| Clavulariidae_g16054 | |
| Clavulariidae_g16055 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g16056 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Clavulariidae_g16057 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16058 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g16059 | |
| Clavulariidae_g1606 | THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1 |
| Clavulariidae_g16060 | |
| Clavulariidae_g16061 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g16062 | |
| Clavulariidae_g16063 | |
| Clavulariidae_g16064 | |
| Clavulariidae_g16065 | ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 |
| Clavulariidae_g16066 | |
| Clavulariidae_g16067 | |
| Clavulariidae_g16068 | TRANSPOSASE, PUTATIVE-RELATED |
| Clavulariidae_g16069 | TRANSPOSASE, PUTATIVE-RELATED |
| Clavulariidae_g1607 | |
| Clavulariidae_g16070 | ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 |
| Clavulariidae_g16071 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g16072 | ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 |
