About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15849
Clavulariidae_g1585-
Clavulariidae_g15850
Clavulariidae_g15851
Clavulariidae_g15852AEROLYSIN-LIKE PROTEIN-RELATED
Clavulariidae_g15853
Clavulariidae_g15854
Clavulariidae_g15855ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15856
Clavulariidae_g15857
Clavulariidae_g15858
Clavulariidae_g15859
Clavulariidae_g1586
Clavulariidae_g15860
Clavulariidae_g15861
Clavulariidae_g15862ETS
Clavulariidae_g15863TRANSIENT RECEPTOR POTENTIAL CHANNEL
Clavulariidae_g15864SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Clavulariidae_g15865MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Clavulariidae_g15866DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g15867TETRATRICOPEPTIDE REPEAT PROTEIN 6
Clavulariidae_g15868
Clavulariidae_g15869ALDEHYDE DEHYDROGENASE-RELATED
Clavulariidae_g1587
Clavulariidae_g15870
Clavulariidae_g15871OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g15872DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41
Clavulariidae_g15873GLYCOSYLTRANSFERASE-RELATED
Clavulariidae_g15874GLUTAMINE-TRNA LIGASE
Clavulariidae_g15875PROTEIN ATP6V1FNB-LIKE
Clavulariidae_g15876UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g15877PROTEIN CBG13728
Clavulariidae_g15878NUCLEAR-INTERACTING PARTNER OF ALK
Clavulariidae_g15879TWINFILIN
Clavulariidae_g1588HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g15880THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1
Clavulariidae_g15881
Clavulariidae_g15882DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15883ENDONUCLEASE-RELATED
Clavulariidae_g15884DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Clavulariidae_g15885
Clavulariidae_g15886G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE
Clavulariidae_g15887
Clavulariidae_g15888ZINC FINGER PROTEIN 183
Clavulariidae_g15889
Clavulariidae_g1589
Clavulariidae_g15890
Clavulariidae_g15891RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15892RAD54-LIKE
Clavulariidae_g15893CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
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