About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15623SERINE/THREONINE-PROTEIN KINASE PIM
Clavulariidae_g15624ATP SYNTHASE GAMMA CHAIN
Clavulariidae_g15625
Clavulariidae_g15626SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN
Clavulariidae_g15627PHOSPHOENOLPYRUVATE CARBOXYKINASE
Clavulariidae_g15628U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4
Clavulariidae_g15629NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2
Clavulariidae_g1563
Clavulariidae_g15630MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED
Clavulariidae_g15631UNCHARACTERIZED
Clavulariidae_g15632SERINE/THREONINE-PROTEIN KINASE
Clavulariidae_g15633HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
Clavulariidae_g15634TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
Clavulariidae_g15635ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15636VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
Clavulariidae_g15637UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG
Clavulariidae_g15638NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
Clavulariidae_g15639CELL DIVISION PROTEIN KINASE
Clavulariidae_g1564
Clavulariidae_g15640TESTIS-SPECIFIC GENE 13 PROTEIN
Clavulariidae_g15641RAB FAMILY
Clavulariidae_g15642SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL
Clavulariidae_g15643S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN
Clavulariidae_g15644CDNA SEQUENCE CN725425
Clavulariidae_g15645WASH COMPLEX SUBUNIT 4
Clavulariidae_g15646PROTON MYO-INOSITOL COTRANSPORTER
Clavulariidae_g15647ALPHA-MANNOSIDASE
Clavulariidae_g15648ALPHA-MANNOSIDASE
Clavulariidae_g15649BICAUDAL D FAMILY MEMBER
Clavulariidae_g1565
Clavulariidae_g15650KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
Clavulariidae_g15651PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15652SOLUTE CARRIER FAMILY 35
Clavulariidae_g15653MYOSIN
Clavulariidae_g15654VESICULAR-FUSION PROTEIN NSF
Clavulariidae_g15655COLIPASE
Clavulariidae_g15656
Clavulariidae_g15657ZINC FINGER PROTEIN
Clavulariidae_g15658PX SERINE/THREONINE KINASE PXK
Clavulariidae_g15659MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN
Clavulariidae_g1566
Clavulariidae_g15660FAT ATYPICAL CADHERIN-RELATED
Clavulariidae_g15661FAT ATYPICAL CADHERIN-RELATED
Clavulariidae_g15662SH2-SH3 ADAPTOR PROTEIN-RELATED
Clavulariidae_g15663DESMOGLEIN FAMILY MEMBER
Clavulariidae_g15664UNCHARACTERIZED
Clavulariidae_g15665DNAJ HOMOLOG SUBFAMILY C MEMBER 2
Clavulariidae_g15666OROTATE PHOSPHORIBOSYLTRANSFERASE
Clavulariidae_g15667AP ENDONUCLEASE
Clavulariidae_g15668HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
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