About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15533GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g15534UNCHARACTERIZED
Clavulariidae_g15535LYSINE-SPECIFIC DEMETHYLASE
Clavulariidae_g15536RHO FAMILY GTPASE
Clavulariidae_g15537PROTEASOME SUBUNIT ALPHA/BETA
Clavulariidae_g15538METALLOPROTEASE
Clavulariidae_g15539METHIONINE AMINOPEPTIDASE 2
Clavulariidae_g1554CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g15540ANKYRIN REPEAT DOMAIN 36-RELATED
Clavulariidae_g15541FORKHEAD BOX PROTEIN
Clavulariidae_g15542SACCHAROPINE DEHYDROGENASE
Clavulariidae_g15543-
Clavulariidae_g15544SACCHAROPINE DEHYDROGENASE
Clavulariidae_g15545UNCHARACTERIZED
Clavulariidae_g15546TRANSMEMBRANE PROTEIN 168
Clavulariidae_g15547UNCHARACTERIZED
Clavulariidae_g15548SUCCINYL-COA SYNTHETASE BETA CHAIN
Clavulariidae_g15549N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
Clavulariidae_g1555
Clavulariidae_g15550CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1
Clavulariidae_g15551CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE
Clavulariidae_g15552DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Clavulariidae_g15553NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
Clavulariidae_g15554CENTROMERE PROTEIN L
Clavulariidae_g15555THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
Clavulariidae_g15556
Clavulariidae_g15557
Clavulariidae_g15558-
Clavulariidae_g15559FORKHEAD BOX P, ISOFORM C
Clavulariidae_g1556
Clavulariidae_g15560ODD-SKIPPED - RELATED
Clavulariidae_g15561ZINC FINGER PROTEIN
Clavulariidae_g15562KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG
Clavulariidae_g15563RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Clavulariidae_g15564UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
Clavulariidae_g15565SYNTHASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_7G04190)-RELATED
Clavulariidae_g15566NISCHARIN RELATED
Clavulariidae_g15567F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
Clavulariidae_g15568RHO FAMILY GTPASE
Clavulariidae_g15569RHO FAMILY GTPASE
Clavulariidae_g1557
Clavulariidae_g15570STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g15571N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1
Clavulariidae_g15572UPSET, ISOFORM A
Clavulariidae_g15573
Clavulariidae_g15574CHONDROITIN SYNTHASE
Clavulariidae_g15575UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g15576DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g155775-HYDROXYTRYPTAMINE RECEPTOR
Clavulariidae_g15578TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
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