Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15399 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g154 | GLYCOPROTEIN HORMONE RECEPTOR |
| Clavulariidae_g1540 | |
| Clavulariidae_g15400 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g15401 | |
| Clavulariidae_g15402 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g15403 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Clavulariidae_g15404 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g15405 | |
| Clavulariidae_g15406 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15407 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Clavulariidae_g15408 | - |
| Clavulariidae_g15409 | EPPIN |
| Clavulariidae_g1541 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g15410 | |
| Clavulariidae_g15411 | EXPRESSED PROTEIN |
| Clavulariidae_g15412 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Clavulariidae_g15413 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15414 | |
| Clavulariidae_g15415 | |
| Clavulariidae_g15416 | RETROTRANSPOSON |
| Clavulariidae_g15417 | |
| Clavulariidae_g15418 | PROTEIN SIDEKICK |
| Clavulariidae_g15419 | PROTEIN CBG26694 |
| Clavulariidae_g1542 | MADF DOMAIN TRANSCRIPTION FACTOR |
| Clavulariidae_g15420 | CYTOKINE RECEPTOR |
| Clavulariidae_g15421 | |
| Clavulariidae_g15422 | VERTNIN |
| Clavulariidae_g15423 | |
| Clavulariidae_g15424 | |
| Clavulariidae_g15425 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g15426 | |
| Clavulariidae_g15427 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g15428 | |
| Clavulariidae_g15429 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1543 | UNCHARACTERIZED |
| Clavulariidae_g15430 | |
| Clavulariidae_g15431 | |
| Clavulariidae_g15432 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15433 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15434 | |
| Clavulariidae_g15435 | MULTICOPPER OXIDASE-RELATED |
| Clavulariidae_g15436 | BTB/POZ DOMAIN-CONTAINING |
| Clavulariidae_g15437 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Clavulariidae_g15438 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g15439 | ELONGATION FACTOR TU-RELATED |
| Clavulariidae_g1544 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15440 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1 |
| Clavulariidae_g15441 | SERINE/THREONINE PROTEIN PHOSPHATASE |
| Clavulariidae_g15442 | ACETYL-COA HYDROLASE-RELATED |
