About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15443TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15444REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15445DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15446ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15447THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g15448PROTEIN CBG26694
Clavulariidae_g1544926S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
Clavulariidae_g1545THAP DOMAIN PROTEIN
Clavulariidae_g154501-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
Clavulariidae_g15451CORTACTIN AND DREBRIN
Clavulariidae_g15452TROPOMYOSIN
Clavulariidae_g15453UNCHARACTERIZED
Clavulariidae_g15454N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE
Clavulariidae_g15455PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Clavulariidae_g15456PHOSPHOLIPASE A2 FAMILY MEMBER
Clavulariidae_g15457BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Clavulariidae_g15458AD039 HT014 THIOREDOXIN FAMILY TRP26
Clavulariidae_g15459NEPHRIN
Clavulariidae_g1546
Clavulariidae_g15460BASIGIN RELATED
Clavulariidae_g15461NEPHRIN
Clavulariidae_g15462
Clavulariidae_g15463NEPHRIN
Clavulariidae_g15464CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Clavulariidae_g15465NEPHRIN
Clavulariidae_g15466COILED-COIL DOMAIN-CONTAINING PROTEIN 157
Clavulariidae_g15467REVERSE TRANSCRIPTASES
Clavulariidae_g15468REVERSE TRANSCRIPTASES
Clavulariidae_g15469REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1547EXPRESSED PROTEIN
Clavulariidae_g15470
Clavulariidae_g15471FUKUTIN RELATED PROTEIN
Clavulariidae_g15472
Clavulariidae_g15473RABCONNECTIN-3B, ISOFORM A
Clavulariidae_g15474
Clavulariidae_g15475UNCHARACTERIZED
Clavulariidae_g15476TYROSINASE FAMILY MEMBER
Clavulariidae_g15477TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
Clavulariidae_g15478HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG
Clavulariidae_g15479CENTROMERE PROTEIN E
Clavulariidae_g1548RETROTRANSPOSON
Clavulariidae_g15480CENTROSOMAL PROTEIN 2
Clavulariidae_g15481ADP RIBOSYLATION FACTOR-RELATED
Clavulariidae_g15482NOP SEVEN ASSOCIATED PROTEIN 1
Clavulariidae_g15483RAB GDP-DISSOCIATION INHIBITOR
Clavulariidae_g15484EXPORTIN-T/LOS1
Clavulariidae_g15485
Clavulariidae_g15486IKB KINASE
Clavulariidae_g15487
Clavulariidae_g15488
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