About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15713UNCHARACTERIZED
Clavulariidae_g15714MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g15715UROCANATE HYDRATASE
Clavulariidae_g15716SPLICING FACTOR 45 SPF45
Clavulariidae_g15717
Clavulariidae_g15718NEUROTRANSMITTER GATED ION CHANNEL
Clavulariidae_g15719
Clavulariidae_g1572
Clavulariidae_g15720GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-LIKE
Clavulariidae_g15721
Clavulariidae_g15722
Clavulariidae_g15723VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g15724-
Clavulariidae_g15725ATP-DEPENDENT RNA HELICASE DBP3
Clavulariidae_g15726
Clavulariidae_g15727LD44762P
Clavulariidae_g15728RING FINGER AND SRY DOMAIN-CONTAINING
Clavulariidae_g15729SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
Clavulariidae_g1573ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g15730T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Clavulariidae_g15731
Clavulariidae_g15732SWI/SNF-RELATED
Clavulariidae_g157336-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
Clavulariidae_g15734CALCIUM-DEPENDENT SECRETION ACTIVATOR
Clavulariidae_g15735RNA POLYMERASE II-ASSOCIATED PROTEIN 3
Clavulariidae_g15736BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g15737CALPAIN, SMALL SUBUNIT 1 A-RELATED
Clavulariidae_g15738UNCHARACTERIZED
Clavulariidae_g15739HMG BOX-CONTAINING PROTEIN 1
Clavulariidae_g1574
Clavulariidae_g15740CENTROMERE PROTEIN K
Clavulariidae_g15741ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g15742SOLUTE CARRIER FAMILY 35 MEMBER B
Clavulariidae_g15743FCH AND DOUBLE SH3 DOMAINS PROTEIN
Clavulariidae_g15744MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g15745F-BOX ONLY PROTEIN 7
Clavulariidae_g15746RETROTRANSPOSON
Clavulariidae_g15747ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Clavulariidae_g15748CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
Clavulariidae_g15749AQUAPORIN-8
Clavulariidae_g1575REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15750LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
Clavulariidae_g15751
Clavulariidae_g15752UNCHARACTERIZED
Clavulariidae_g15753GLUTAMATE RECEPTOR-INTERACTING PROTEIN GRIP
Clavulariidae_g15754OVOCHYMASE-RELATED
Clavulariidae_g15755OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g15756OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g15757OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g15758CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
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