About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15939REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1594-
Clavulariidae_g15940PROTEIN CBG26694
Clavulariidae_g15941BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED
Clavulariidae_g15942AUTOPHAGY-RELATED 2, ISOFORM A
Clavulariidae_g15943HOMEOBOX PROTEIN ARISTALESS
Clavulariidae_g15944
Clavulariidae_g15945BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN
Clavulariidae_g15946UNCHARACTERIZED
Clavulariidae_g15947ZINC FINGER PROTEIN ZIC AND GLI
Clavulariidae_g15948PROTEASE FAMILY S9A OLIGOPEPTIDASE
Clavulariidae_g15949INTELECTIN
Clavulariidae_g1595
Clavulariidae_g15950WD40 REPEAT PROTEIN
Clavulariidae_g15951OPTIC ATROPHY 3 PROTEIN OPA3
Clavulariidae_g15952PROTEIN DISPATCHED-RELATED
Clavulariidae_g15953INTELECTIN
Clavulariidae_g15954
Clavulariidae_g15955INTELECTIN
Clavulariidae_g15956INTELECTIN
Clavulariidae_g15957SIGNALING PEPTIDE TAXIMIN 2
Clavulariidae_g15958REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15959ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g1596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15960
Clavulariidae_g15961AEROLYSIN-LIKE PROTEIN-RELATED
Clavulariidae_g15962
Clavulariidae_g15963ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g15964ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g15965RETROTRANSPOSON
Clavulariidae_g15966ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g15967-
Clavulariidae_g15968TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g15969
Clavulariidae_g1597DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g15970
Clavulariidae_g15971N-MYC DOWNSTREAM REGULATED
Clavulariidae_g15972REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15973BONUS, ISOFORM C-RELATED
Clavulariidae_g15974BONUS, ISOFORM C-RELATED
Clavulariidae_g15975BONUS, ISOFORM C-RELATED
Clavulariidae_g15976NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
Clavulariidae_g15977
Clavulariidae_g15978COLLAGEN ALPHA
Clavulariidae_g15979DNA-BINDING PROTEIN-RELATED-RELATED
Clavulariidae_g1598REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15980COLLAGEN ALPHA
Clavulariidae_g15981BONUS, ISOFORM C-RELATED
Clavulariidae_g15982PROTEIN CBG26694
Clavulariidae_g15983PROTEIN CBG26694
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