Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g16073 | ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2 |
| Clavulariidae_g16074 | LD33804P |
| Clavulariidae_g16075 | LD33804P |
| Clavulariidae_g16076 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16077 | TNF RECEPTOR ASSOCIATED FACTOR |
| Clavulariidae_g16078 | |
| Clavulariidae_g16079 | - |
| Clavulariidae_g1608 | - |
| Clavulariidae_g16080 | |
| Clavulariidae_g16081 | |
| Clavulariidae_g16082 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16083 | TYROSINE-PROTEIN KINASE |
| Clavulariidae_g16084 | |
| Clavulariidae_g16085 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16086 | |
| Clavulariidae_g16087 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16088 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16089 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1609 | |
| Clavulariidae_g16090 | L-ASPARAGINASE |
| Clavulariidae_g16091 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g16092 | |
| Clavulariidae_g16093 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16094 | REGULATOR-RELATED |
| Clavulariidae_g16095 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g16096 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g16097 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16098 | |
| Clavulariidae_g16099 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g161 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1610 | RETROTRANSPOSON |
| Clavulariidae_g16100 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g16101 | |
| Clavulariidae_g16102 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g16103 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16104 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16105 | DNA POLYMERASE |
| Clavulariidae_g16106 | |
| Clavulariidae_g16107 | |
| Clavulariidae_g16108 | COLLAGEN ALPHA |
| Clavulariidae_g16109 | |
| Clavulariidae_g1611 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Clavulariidae_g16110 | |
| Clavulariidae_g16111 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16112 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Clavulariidae_g16113 | |
| Clavulariidae_g16114 | TRANSPOSABLE ELEMENT-RELATED |
| Clavulariidae_g16115 | |
| Clavulariidae_g16116 | |
| Clavulariidae_g16117 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE |
