Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g16163 | RETROTRANSPOSON |
| Clavulariidae_g16164 | PROTEIN CBG26694 |
| Clavulariidae_g16165 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16166 | |
| Clavulariidae_g16167 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16168 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g16169 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g1617 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| Clavulariidae_g16170 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Clavulariidae_g16171 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16172 | UNCHARACTERIZED |
| Clavulariidae_g16173 | |
| Clavulariidae_g16174 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16175 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16176 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16177 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16178 | |
| Clavulariidae_g16179 | |
| Clavulariidae_g1618 | |
| Clavulariidae_g16180 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16181 | NB-ARC AND TPR DOMAIN PROTEIN |
| Clavulariidae_g16182 | |
| Clavulariidae_g16183 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Clavulariidae_g16184 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16185 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g16186 | |
| Clavulariidae_g16187 | |
| Clavulariidae_g16188 | SI:CH211-266K2.1 |
| Clavulariidae_g16189 | |
| Clavulariidae_g1619 | ZGC:195170 |
| Clavulariidae_g16190 | PROTEIN CBG23764 |
| Clavulariidae_g16191 | L-ASPARAGINASE |
| Clavulariidae_g16192 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Clavulariidae_g16193 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g16194 | RETROTRANSPOSON |
| Clavulariidae_g16195 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g16196 | RETROTRANSPOSON |
| Clavulariidae_g16197 | L-ASPARAGINASE |
| Clavulariidae_g16198 | |
| Clavulariidae_g16199 | |
| Clavulariidae_g162 | RETROTRANSPOSON |
| Clavulariidae_g1620 | |
| Clavulariidae_g16200 | |
| Clavulariidae_g16201 | MADS BOX PROTEIN |
| Clavulariidae_g16202 | THYROID RECEPTOR INTERACTING PROTEIN RELATED |
| Clavulariidae_g16203 | I[[H]] CHANNEL, ISOFORM E |
| Clavulariidae_g16204 | NEPHRIN |
| Clavulariidae_g16205 | RNA LARIAT DEBRANCHING ENZYME |
| Clavulariidae_g16206 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g16207 | SEC3/SYNTAXIN-RELATED |
