About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16118HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Clavulariidae_g16119AMMONIUM TRANSPORTER
Clavulariidae_g1612
Clavulariidae_g16120ZGC:195170
Clavulariidae_g16121SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g16122
Clavulariidae_g16123UNCHARACTERIZED
Clavulariidae_g16124UPF0705 PROTEIN C11ORF49
Clavulariidae_g16125
Clavulariidae_g16126
Clavulariidae_g16127EXPRESSED PROTEIN
Clavulariidae_g16128POL PROTEIN
Clavulariidae_g16129
Clavulariidae_g1613REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16130
Clavulariidae_g16131
Clavulariidae_g16132PROTEIN CBG26694
Clavulariidae_g16133
Clavulariidae_g16134
Clavulariidae_g16135REVERSE TRANSCRIPTASE
Clavulariidae_g16136
Clavulariidae_g16137
Clavulariidae_g16138
Clavulariidae_g16139HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1614
Clavulariidae_g16140
Clavulariidae_g16141
Clavulariidae_g16142DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16143
Clavulariidae_g16144ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16145REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16146REVERSE TRANSCRIPTASES
Clavulariidae_g16147ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16148
Clavulariidae_g16149
Clavulariidae_g1615
Clavulariidae_g16150
Clavulariidae_g16151
Clavulariidae_g16152TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16153
Clavulariidae_g16154
Clavulariidae_g16155DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16156REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16157
Clavulariidae_g16158PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16159RETROTRANSPOSON
Clavulariidae_g1616
Clavulariidae_g16160
Clavulariidae_g16161COLLAGEN ALPHA
Clavulariidae_g16162
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