Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16253 | |
Clavulariidae_g16254 | PROTEIN CBG26694 |
Clavulariidae_g16255 | GLYCOSYLTRANSFERASE STELLO1-RELATED |
Clavulariidae_g16256 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16257 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16258 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
Clavulariidae_g16259 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g1626 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Clavulariidae_g16260 | |
Clavulariidae_g16261 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16262 | |
Clavulariidae_g16263 | CXC2 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16264 | |
Clavulariidae_g16265 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g16266 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g16267 | |
Clavulariidae_g16268 | |
Clavulariidae_g16269 | |
Clavulariidae_g1627 | |
Clavulariidae_g16270 | |
Clavulariidae_g16271 | EXPRESSED PROTEIN |
Clavulariidae_g16272 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
Clavulariidae_g16273 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g16274 | |
Clavulariidae_g16275 | GLUTAREDOXIN |
Clavulariidae_g16276 | DRAB11-RELATED |
Clavulariidae_g16277 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16278 | |
Clavulariidae_g16279 | PROTEIN CBG17840 |
Clavulariidae_g1628 | |
Clavulariidae_g16280 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16281 | |
Clavulariidae_g16282 | |
Clavulariidae_g16283 | O-METHYLTRANSFERASE |
Clavulariidae_g16284 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16285 | |
Clavulariidae_g16286 | YY1 ASSOCIATED PROTEIN-RELATED |
Clavulariidae_g16287 | |
Clavulariidae_g16288 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16289 | THAP DOMAIN PROTEIN |
Clavulariidae_g1629 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16290 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16291 | ENZYMATIC POLYPROTEIN-RELATED |
Clavulariidae_g16292 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16293 | - |
Clavulariidae_g16294 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16295 | |
Clavulariidae_g16296 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
Clavulariidae_g16297 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16298 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |