About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16253
Clavulariidae_g16254PROTEIN CBG26694
Clavulariidae_g16255GLYCOSYLTRANSFERASE STELLO1-RELATED
Clavulariidae_g16256REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16257TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16258SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
Clavulariidae_g16259TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1626HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g16260
Clavulariidae_g16261REVERSE TRANSCRIPTASES
Clavulariidae_g16262
Clavulariidae_g16263CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16264
Clavulariidae_g16265ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16266ATP-DEPENDENT DNA HELICASE
Clavulariidae_g16267
Clavulariidae_g16268
Clavulariidae_g16269
Clavulariidae_g1627
Clavulariidae_g16270
Clavulariidae_g16271EXPRESSED PROTEIN
Clavulariidae_g16272EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g16273L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16274
Clavulariidae_g16275GLUTAREDOXIN
Clavulariidae_g16276DRAB11-RELATED
Clavulariidae_g16277REVERSE TRANSCRIPTASES
Clavulariidae_g16278
Clavulariidae_g16279PROTEIN CBG17840
Clavulariidae_g1628
Clavulariidae_g16280REVERSE TRANSCRIPTASES
Clavulariidae_g16281
Clavulariidae_g16282
Clavulariidae_g16283O-METHYLTRANSFERASE
Clavulariidae_g16284REVERSE TRANSCRIPTASES
Clavulariidae_g16285
Clavulariidae_g16286YY1 ASSOCIATED PROTEIN-RELATED
Clavulariidae_g16287
Clavulariidae_g16288ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16289THAP DOMAIN PROTEIN
Clavulariidae_g1629TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16290REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16291ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g16292TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16293-
Clavulariidae_g16294ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16295
Clavulariidae_g16296INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g16297REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16298INNER MEMBRANE TRANSPORT PROTEIN YAJR
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