About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16343
Clavulariidae_g16344ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16345
Clavulariidae_g16346
Clavulariidae_g16347
Clavulariidae_g16348PROTEIN CBG26694
Clavulariidae_g16349UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g1635UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER
Clavulariidae_g16350
Clavulariidae_g16351PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g16352PROTEIN CBG23764
Clavulariidae_g16353
Clavulariidae_g16354
Clavulariidae_g16355SI:CH211-266K2.1
Clavulariidae_g16356UNCHARACTERIZED
Clavulariidae_g16357THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g16358DNA POLYMERASE
Clavulariidae_g16359
Clavulariidae_g1636RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
Clavulariidae_g16360SI:CH211-266K2.1
Clavulariidae_g16361
Clavulariidae_g16362
Clavulariidae_g16363
Clavulariidae_g16364REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16365EPM2A-INTERACTING PROTEIN 1
Clavulariidae_g16366REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16367G PROTEIN-COUPLED RECEPTOR
Clavulariidae_g16368
Clavulariidae_g16369ENDONUCLEASE-RELATED
Clavulariidae_g1637NUCLEAR HORMONE RECEPTOR
Clavulariidae_g16370G PROTEIN-COUPLED RECEPTOR
Clavulariidae_g16371
Clavulariidae_g16372G PROTEIN-COUPLED RECEPTOR
Clavulariidae_g16373REVERSE TRANSCRIPTASES
Clavulariidae_g16374WD40 REPEAT PROTEIN
Clavulariidae_g16375-
Clavulariidae_g16376
Clavulariidae_g16377
Clavulariidae_g16378PLACENTAL PROTEIN 11-RELATED
Clavulariidae_g16379PROTEIN SIDEKICK
Clavulariidae_g1638NEPHROCYSTIN
Clavulariidae_g16380DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16381DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16382CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16383ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16384HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g16385
Clavulariidae_g16386
Clavulariidae_g163875'-NUCLEOTIDASE DOMAIN-CONTAINING
Clavulariidae_g16388UNCHARACTERIZED
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