About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16479ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1648MUTATED IN BLADDER CANCER 1
Clavulariidae_g16480
Clavulariidae_g16481ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g16482
Clavulariidae_g16483ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g16484
Clavulariidae_g16485REVERSE TRANSCRIPTASES
Clavulariidae_g16486
Clavulariidae_g16487
Clavulariidae_g16488RETROTRANSPOSON
Clavulariidae_g16489
Clavulariidae_g1649MYOSIN
Clavulariidae_g16490
Clavulariidae_g16491
Clavulariidae_g16492
Clavulariidae_g16493
Clavulariidae_g16494
Clavulariidae_g16495
Clavulariidae_g16496
Clavulariidae_g16497
Clavulariidae_g16498
Clavulariidae_g16499
Clavulariidae_g165ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1650PYM PROTEIN
Clavulariidae_g16500DNA POLYMERASE
Clavulariidae_g16501
Clavulariidae_g16502
Clavulariidae_g16503PROTEIN CBG26694
Clavulariidae_g16504UNCHARACTERIZED
Clavulariidae_g16505
Clavulariidae_g16506DNA HELICASE-RELATED
Clavulariidae_g16507DNA HELICASE-RELATED
Clavulariidae_g16508PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g16509THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1651ADENOSINE DEAMINASE
Clavulariidae_g16510PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16511
Clavulariidae_g16512
Clavulariidae_g16513
Clavulariidae_g16514KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g16515PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16516PROTEIN CBG26694
Clavulariidae_g16517
Clavulariidae_g16518-
Clavulariidae_g16519
Clavulariidae_g1652REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED
Clavulariidae_g16520
Clavulariidae_g16521PROTEIN CBG26694
Clavulariidae_g16522THAP DOMAIN PROTEIN
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