Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g16613 | PROTEIN CBG26694 |
Clavulariidae_g16614 | |
Clavulariidae_g16615 | L-ASPARAGINASE |
Clavulariidae_g16616 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16617 | |
Clavulariidae_g16618 | ENZYMATIC POLYPROTEIN-RELATED |
Clavulariidae_g16619 | |
Clavulariidae_g1662 | POLY A POLYMERASE CID PAP -RELATED |
Clavulariidae_g16620 | |
Clavulariidae_g16621 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g16622 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16623 | |
Clavulariidae_g16624 | |
Clavulariidae_g16625 | |
Clavulariidae_g16626 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g16627 | REVERSE TRANSCRIPTASES |
Clavulariidae_g16628 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Clavulariidae_g16629 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1663 | UNCHARACTERIZED |
Clavulariidae_g16630 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16631 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Clavulariidae_g16632 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16633 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Clavulariidae_g16634 | CHOLINE/ETHANOALAMINE KINASE |
Clavulariidae_g16635 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g16636 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16637 | |
Clavulariidae_g16638 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g16639 | ANKYRIN REPEAT PROTEIN |
Clavulariidae_g1664 | NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT |
Clavulariidae_g16640 | |
Clavulariidae_g16641 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16642 | RETROTRANSPOSON |
Clavulariidae_g16643 | |
Clavulariidae_g16644 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g16645 | MASK PROTEIN |
Clavulariidae_g16646 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g16647 | |
Clavulariidae_g16648 | |
Clavulariidae_g16649 | INTELECTIN |
Clavulariidae_g1665 | UNCHARACTERIZED |
Clavulariidae_g16650 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g16651 | PROTEIN CBG26694 |
Clavulariidae_g16652 | |
Clavulariidae_g16653 | |
Clavulariidae_g16654 | GTP PYROPHOSPHOKINASE YJBM |
Clavulariidae_g16655 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Clavulariidae_g16656 | |
Clavulariidae_g16657 | GTP PYROPHOSPHOKINASE YJBM |
Clavulariidae_g16658 |