About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16613PROTEIN CBG26694
Clavulariidae_g16614
Clavulariidae_g16615L-ASPARAGINASE
Clavulariidae_g16616REVERSE TRANSCRIPTASES
Clavulariidae_g16617
Clavulariidae_g16618ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g16619
Clavulariidae_g1662POLY A POLYMERASE CID PAP -RELATED
Clavulariidae_g16620
Clavulariidae_g16621SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g16622DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16623
Clavulariidae_g16624
Clavulariidae_g16625
Clavulariidae_g16626DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16627REVERSE TRANSCRIPTASES
Clavulariidae_g16628MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g16629PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1663UNCHARACTERIZED
Clavulariidae_g16630ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16631THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g16632CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16633THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g16634CHOLINE/ETHANOALAMINE KINASE
Clavulariidae_g16635CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16636REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16637
Clavulariidae_g16638TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16639ANKYRIN REPEAT PROTEIN
Clavulariidae_g1664NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT
Clavulariidae_g16640
Clavulariidae_g16641DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16642RETROTRANSPOSON
Clavulariidae_g16643
Clavulariidae_g16644DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16645MASK PROTEIN
Clavulariidae_g16646REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16647
Clavulariidae_g16648
Clavulariidae_g16649INTELECTIN
Clavulariidae_g1665UNCHARACTERIZED
Clavulariidae_g16650FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g16651PROTEIN CBG26694
Clavulariidae_g16652
Clavulariidae_g16653
Clavulariidae_g16654GTP PYROPHOSPHOKINASE YJBM
Clavulariidae_g16655DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Clavulariidae_g16656
Clavulariidae_g16657GTP PYROPHOSPHOKINASE YJBM
Clavulariidae_g16658
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