About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16749UNCHARACTERIZED
Clavulariidae_g1675ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE
Clavulariidae_g16750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16751FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16752
Clavulariidae_g16753F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16754JUN TRANSCRIPTION FACTOR-RELATED
Clavulariidae_g16755DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Clavulariidae_g16756RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Clavulariidae_g16757GABA-B RECEPTOR
Clavulariidae_g16758KPL2-RELATED
Clavulariidae_g16759RE40534P-RELATED
Clavulariidae_g1676FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
Clavulariidae_g16760TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA
Clavulariidae_g16761PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16762MATRIX METALLOPROTEINASE
Clavulariidae_g16763MATRIX METALLOPROTEINASE
Clavulariidae_g16764REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16765GLUTAMINE SYNTHETASE
Clavulariidae_g16766CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16767CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16768AGAP001331-PA-RELATED
Clavulariidae_g16769
Clavulariidae_g1677LEUCINE RICH REPEAT KINASE 2
Clavulariidae_g16770DEOXYRIBONUCLEASE
Clavulariidae_g16771DEP DOMAIN-CONTAINING
Clavulariidae_g167723-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE
Clavulariidae_g16773
Clavulariidae_g16774MYOTROPHIN
Clavulariidae_g16775
Clavulariidae_g16776
Clavulariidae_g16777
Clavulariidae_g16778COLLAGEN ALPHA
Clavulariidae_g16779
Clavulariidae_g1678STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5
Clavulariidae_g16780REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16781TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g16782
Clavulariidae_g16783MYOTROPHIN
Clavulariidae_g16784
Clavulariidae_g16785CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16786DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16787
Clavulariidae_g16788
Clavulariidae_g16789MYOTROPHIN
Clavulariidae_g1679CCAAT/ENHANCER BINDING PROTEIN
Clavulariidae_g16790PATCHED-RELATED
Clavulariidae_g16791
Clavulariidae_g16792DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16793
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