About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16839
Clavulariidae_g1684SERINE/THREONINE-PROTEIN KINASE 17
Clavulariidae_g16840RIBULOKINASE
Clavulariidae_g16841KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
Clavulariidae_g16842UBIQUITIN-PROTEIN LIGASE E3C
Clavulariidae_g16843
Clavulariidae_g16844
Clavulariidae_g16845REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16846OXIDASE/PEROXIDASE
Clavulariidae_g16847NADPH OXIDASE
Clavulariidae_g16848RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
Clavulariidae_g16849CAMP-BINDING PROTEIN 1-RELATED
Clavulariidae_g1685TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER
Clavulariidae_g16850ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16851
Clavulariidae_g16852L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16853
Clavulariidae_g16854UNCHARACTERIZED
Clavulariidae_g16855CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g16856
Clavulariidae_g16857
Clavulariidae_g16858
Clavulariidae_g16859UNCHARACTERIZED
Clavulariidae_g1686DNA-DIRECTED RNA POLYMERASE III
Clavulariidae_g16860DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16861CAMP-BINDING PROTEIN 1-RELATED
Clavulariidae_g16862
Clavulariidae_g16863CAMP-BINDING PROTEIN 1-RELATED
Clavulariidae_g16864TRANSPOSASE
Clavulariidae_g16865
Clavulariidae_g16866C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16867REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16868
Clavulariidae_g16869UNCHARACTERIZED
Clavulariidae_g1687PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED
Clavulariidae_g16870-
Clavulariidae_g16871AMP DEAMINASE
Clavulariidae_g16872EPOXIDE HYDROLASE
Clavulariidae_g16873OXIDASE/PEROXIDASE
Clavulariidae_g16874
Clavulariidae_g16875NARDILYSIN
Clavulariidae_g16876METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
Clavulariidae_g16877
Clavulariidae_g16878
Clavulariidae_g16879REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1688MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
Clavulariidae_g16880ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16881HELICASE
Clavulariidae_g16882REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16883
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