About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g16929THAP DOMAIN PROTEIN
Clavulariidae_g1693ANKYRIN REPEAT FAMILY PROTEIN
Clavulariidae_g16930
Clavulariidae_g16931CYTOKINE RECEPTOR
Clavulariidae_g16932
Clavulariidae_g16933
Clavulariidae_g16934
Clavulariidae_g16935LD33804P
Clavulariidae_g16936GLUTATHIONE S-TRANSFERASE KAPPA
Clavulariidae_g16937
Clavulariidae_g16938SI:CH211-266K2.1
Clavulariidae_g16939DNA POLYMERASE
Clavulariidae_g1694CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161
Clavulariidae_g16940L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g16941
Clavulariidae_g16942ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16943REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16944
Clavulariidae_g16945SERINE-THREONINE PROTEIN KINASE
Clavulariidae_g16946
Clavulariidae_g16947PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16948TYROSINE-PROTEIN KINASE
Clavulariidae_g16949CXC2 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1695
Clavulariidae_g16950INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16951DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g16952
Clavulariidae_g16953
Clavulariidae_g16954
Clavulariidae_g16955
Clavulariidae_g16956
Clavulariidae_g16957EXPRESSED PROTEIN
Clavulariidae_g16958SI:CH211-266K2.1
Clavulariidae_g16959
Clavulariidae_g1696
Clavulariidae_g1696052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g16961
Clavulariidae_g16962
Clavulariidae_g16963
Clavulariidae_g16964
Clavulariidae_g16965HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g16966PALMITOYLTRANSFERASE
Clavulariidae_g16967REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16968
Clavulariidae_g16969
Clavulariidae_g1697REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g16970
Clavulariidae_g16971
Clavulariidae_g16972
Clavulariidae_g16973PUTATIVE-RELATED
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