Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g17063 | |
Clavulariidae_g17064 | |
Clavulariidae_g17065 | EXPRESSED PROTEIN |
Clavulariidae_g17066 | |
Clavulariidae_g17067 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g17068 | |
Clavulariidae_g17069 | |
Clavulariidae_g1707 | LIPOXYGENASE |
Clavulariidae_g17070 | MYOTUBULARIN-RELATED |
Clavulariidae_g17071 | DNA2/NAM7 HELICASE FAMILY |
Clavulariidae_g17072 | KINETOCHORE SCAFFOLD 1 |
Clavulariidae_g17073 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Clavulariidae_g17074 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g17075 | |
Clavulariidae_g17076 | |
Clavulariidae_g17077 | MODULATOR OF FTSH PROTEASE HFLC |
Clavulariidae_g17078 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL |
Clavulariidae_g17079 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
Clavulariidae_g1708 | |
Clavulariidae_g17080 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
Clavulariidae_g17081 | |
Clavulariidae_g17082 | PROTEIN ABHD18 |
Clavulariidae_g17083 | STERILE20-LIKE KINASE, ISOFORM B-RELATED |
Clavulariidae_g17084 | BLR2807 PROTEIN |
Clavulariidae_g17085 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g17086 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g17087 | - |
Clavulariidae_g17088 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g17089 | BTB/POZ DOMAIN-CONTAINING |
Clavulariidae_g1709 | |
Clavulariidae_g17090 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
Clavulariidae_g17091 | TUBULIN FOLDING COFACTOR C |
Clavulariidae_g17092 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17093 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g17094 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
Clavulariidae_g17095 | BLR2807 PROTEIN |
Clavulariidae_g17096 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Clavulariidae_g17097 | |
Clavulariidae_g17098 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17099 | |
Clavulariidae_g171 | LONGEVITY ASSURANCE FACTOR 1 LAG1 |
Clavulariidae_g1710 | POL PROTEIN |
Clavulariidae_g17100 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17101 | RETROTRANSPOSON |
Clavulariidae_g17102 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17103 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17104 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17105 | |
Clavulariidae_g17106 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
Clavulariidae_g17107 |