About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17063
Clavulariidae_g17064
Clavulariidae_g17065EXPRESSED PROTEIN
Clavulariidae_g17066
Clavulariidae_g17067ATP-DEPENDENT DNA HELICASE
Clavulariidae_g17068
Clavulariidae_g17069
Clavulariidae_g1707LIPOXYGENASE
Clavulariidae_g17070MYOTUBULARIN-RELATED
Clavulariidae_g17071DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g17072KINETOCHORE SCAFFOLD 1
Clavulariidae_g17073FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g17074MULTICOPPER OXIDASE-RELATED
Clavulariidae_g17075
Clavulariidae_g17076
Clavulariidae_g17077MODULATOR OF FTSH PROTEASE HFLC
Clavulariidae_g17078WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL
Clavulariidae_g17079MYOTONIC DYSTROPHY S/T KINASE-RELATED
Clavulariidae_g1708
Clavulariidae_g17080TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Clavulariidae_g17081
Clavulariidae_g17082PROTEIN ABHD18
Clavulariidae_g17083STERILE20-LIKE KINASE, ISOFORM B-RELATED
Clavulariidae_g17084BLR2807 PROTEIN
Clavulariidae_g17085BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g17086BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g17087-
Clavulariidae_g17088BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g17089BTB/POZ DOMAIN-CONTAINING
Clavulariidae_g1709
Clavulariidae_g17090DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Clavulariidae_g17091TUBULIN FOLDING COFACTOR C
Clavulariidae_g17092PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17093PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17094YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
Clavulariidae_g17095BLR2807 PROTEIN
Clavulariidae_g17096T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Clavulariidae_g17097
Clavulariidae_g17098OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17099
Clavulariidae_g171LONGEVITY ASSURANCE FACTOR 1 LAG1
Clavulariidae_g1710POL PROTEIN
Clavulariidae_g17100OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17101RETROTRANSPOSON
Clavulariidae_g17102OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17103OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17104OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17105
Clavulariidae_g17106OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Clavulariidae_g17107
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