About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17199INWARD RECTIFIER POTASSIUM CHANNEL
Clavulariidae_g172
Clavulariidae_g1720SI:CH211-266K2.1
Clavulariidae_g17200JUN TRANSCRIPTION FACTOR-RELATED
Clavulariidae_g17201UNCHARACTERIZED
Clavulariidae_g17202
Clavulariidae_g17203CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17204EPHRIN
Clavulariidae_g17205MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
Clavulariidae_g17206
Clavulariidae_g17207
Clavulariidae_g17208EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Clavulariidae_g17209EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Clavulariidae_g1721
Clavulariidae_g17210EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Clavulariidae_g17211
Clavulariidae_g17212KINESIN LIGHT CHAIN
Clavulariidae_g17213KINESIN LIGHT CHAIN
Clavulariidae_g17214
Clavulariidae_g17215DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g17216
Clavulariidae_g172175'-NUCLEOTIDASE
Clavulariidae_g17218
Clavulariidae_g17219
Clavulariidae_g1722
Clavulariidae_g17220TRNA THREONYLCARBAMOYLADENOSINE DEHYDRATASE
Clavulariidae_g17221
Clavulariidae_g17222BONUS, ISOFORM C-RELATED
Clavulariidae_g17223BONUS, ISOFORM C-RELATED
Clavulariidae_g17224
Clavulariidae_g17225
Clavulariidae_g17226
Clavulariidae_g17227
Clavulariidae_g17228
Clavulariidae_g17229
Clavulariidae_g1723ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g17230
Clavulariidae_g17231
Clavulariidae_g17232
Clavulariidae_g17233PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE
Clavulariidae_g17234FORKHEAD BOX PROTEIN
Clavulariidae_g17235FORKHEAD BOX PROTEIN
Clavulariidae_g17236
Clavulariidae_g17237GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2
Clavulariidae_g17238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17239GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2
Clavulariidae_g1724
Clavulariidae_g17240
Clavulariidae_g17241
Clavulariidae_g17242
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