About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17289LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11
Clavulariidae_g1729REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17290FUMARYLACETOACETASE
Clavulariidae_g17291TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
Clavulariidae_g17292DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN
Clavulariidae_g17293ACTIN
Clavulariidae_g17294
Clavulariidae_g17295DNAJ HOMOLOG SUBFAMILY C MEMBER 7
Clavulariidae_g17296REVERSE TRANSCRIPTASES
Clavulariidae_g17297ARMADILLO SEGMENT POLARITY PROTEIN
Clavulariidae_g17298HOMEOBOX PROTEIN
Clavulariidae_g17299INTELECTIN
Clavulariidae_g173GROWTH FACTOR RECEPTOR-BOUND PROTEIN
Clavulariidae_g1730SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g17300HOMEOBOX PROTEIN ARISTALESS
Clavulariidae_g17301UNCHARACTERIZED
Clavulariidae_g17302LOC100145250 PROTEIN
Clavulariidae_g17303ANKYRIN REPEAT FAMILY PROTEIN
Clavulariidae_g17304EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
Clavulariidae_g17305EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11
Clavulariidae_g17306REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17307PA-PL1 PHOSPHOLIPASE FAMILY
Clavulariidae_g17308-
Clavulariidae_g17309ARYL HYDROCARBON RECEPTOR
Clavulariidae_g1731
Clavulariidae_g17310BETA-1,4-GALACTOSYLTRANSFERASE
Clavulariidae_g17311FMS INTERACTING PROTEIN
Clavulariidae_g17312RHO GUANINE EXCHANGE FACTOR-RELATED
Clavulariidae_g17313CONTACTIN 5
Clavulariidae_g17314SERINE/THREONINE-PROTEIN KINASE 17
Clavulariidae_g17315ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g17316
Clavulariidae_g17317ZGC:162816-RELATED
Clavulariidae_g17318VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
Clavulariidae_g17319DULLARD PROTEIN PHOSPHATASE
Clavulariidae_g1732DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17320CHARGED MULTIVESICULAR BODY PROTEIN
Clavulariidae_g17321UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g17322ADENOSINE/GUANOSINE DIPHOSPHATASE
Clavulariidae_g17323INOSITOL 5-PHOSPHATASE
Clavulariidae_g17324FTP DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17325MULTICOPPER OXIDASE-RELATED
Clavulariidae_g17326MULTICOPPER OXIDASE-RELATED
Clavulariidae_g17327FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g17328HOMEOBOX PROTEIN NKX
Clavulariidae_g17329PRE-MRNA SPLICING FACTOR
Clavulariidae_g1733
Clavulariidae_g17330BRCA1-ASSOCIATED ATM ACTIVATOR 1
Clavulariidae_g17331LUPUS LA PROTEIN-RELATED
Clavulariidae_g17332
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