About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17333PROPERDIN
Clavulariidae_g17334MULTICOPPER OXIDASE-RELATED
Clavulariidae_g17335EGF-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17336REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17337
Clavulariidae_g17338
Clavulariidae_g17339
Clavulariidae_g1734
Clavulariidae_g17340OS12G0117600 PROTEIN
Clavulariidae_g17341
Clavulariidae_g17342PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P
Clavulariidae_g17343UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g17344SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
Clavulariidae_g17345U6 SNRNA-ASSOCIATED PROTEIN
Clavulariidae_g17346UBIQUITIN-CONJUGATING ENZYME E2
Clavulariidae_g17347PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Clavulariidae_g17348
Clavulariidae_g17349FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Clavulariidae_g1735PROTEIN CBG23764
Clavulariidae_g17350REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17351FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Clavulariidae_g17352
Clavulariidae_g17353
Clavulariidae_g17354TRANSPOSASE
Clavulariidae_g17355PROTEIN CBG26694
Clavulariidae_g17356
Clavulariidae_g17357PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17358FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Clavulariidae_g17359FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Clavulariidae_g173652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g17360FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145
Clavulariidae_g17361PROTEIN CBG26694
Clavulariidae_g17362PROTEIN CBG26694
Clavulariidae_g17363ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17364SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g17365REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17366RETROTRANSPOSON
Clavulariidae_g17367ATP-DEPENDENT DNA HELICASE
Clavulariidae_g17368
Clavulariidae_g17369TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g1737ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17370
Clavulariidae_g17371THREE PRIME REPAIR EXONUCLEASE 1, 2
Clavulariidae_g17372DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g17373
Clavulariidae_g17374
Clavulariidae_g17375RETROTRANSPOSON
Clavulariidae_g17376
Clavulariidae_g17377REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17378DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
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